View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_38 (Length: 273)
Name: NF2747_high_38
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 725292 - 725562
Alignment:
| Q |
1 |
tacttaagaactaggttatttttgacatgttatatttatgaataaacaagcttaaattttactnnnnnnnnnnnnnnnnnnnntaagatcttgatgggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
725292 |
tacttaagaactaggttatttttgacatgttatatttatgaataaata--cttaaattttactaaaaaaaaggaagaaaaaaataagatcttgatgggac |
725389 |
T |
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| Q |
101 |
gtaaaccgaacccataaacaaacaaaaaattggaaacataaaataattacatagtattactagaaccaactttaaagtgggacgt--aaac--------- |
189 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
725390 |
ataaaccgaacccataaacaaacaaaaaattggaaacataaaataattacatagtattactagaaccaactttaaagtgggtattagaaactacctcact |
725489 |
T |
|
| Q |
190 |
------tttattttgcttgttatacttaaaatgatcctcctatcattttaataaacctttcacaacaactttc |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
725490 |
cttaggtttattttgcttgttatacttaaaatgatcctcctatcattttaataaacctttcacaacaactttc |
725562 |
T |
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