View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2747_high_4 (Length: 626)
Name: NF2747_high_4
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 6 - 614
Target Start/End: Original strand, 40084279 - 40084880
Alignment:
| Q |
6 |
gtcatctcttgatttaaaaatactatttctatcatttattaaaaaatgctttgccagctttttcaataaaatcaaccatattaattgcttgctttcctat |
105 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40084279 |
gtcatcacttaatttaaaaatactattactatcatttattaagaaaggctttgccagcttttgcaataaaatcaaccatgttaattgcttgctttcctat |
40084378 |
T |
|
| Q |
106 |
gctaacttttccaggaagtaagccccactaacaccctctcaagagtgcatactcttaaaa-aatatttatttgctttaagcgttgactaatgaagattga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40084379 |
gctaacttttccaggaagtaagccccactaacaccctctcaagagtgcatactcttaaaaaaatatttatttgctttaagcgttgactaatgaagattga |
40084478 |
T |
|
| Q |
205 |
tatattcataatacaacatagaacattttgttttattagttttatattcaagttcataatattcacccgtgaataagaaatatgtgaatatttaactatg |
304 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40084479 |
tatattcataatacatcatagaacattttgttttattagttttatattcaagttcataatattcacccgtgaataagaaatatgtgaatatttaactatg |
40084578 |
T |
|
| Q |
305 |
attataactacagaccattcttgctcatctatttgatttactagtagtacannnnnnnnnnnggagcaatttactagtagtacttaacttttaattagtt |
404 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
40084579 |
attataaatgctgaccattcttgctcatctatttgatttactagtagtaca-ttttttttttggagcaatttactaatagtacttagcttttaattagtt |
40084677 |
T |
|
| Q |
405 |
aacaattaataaagagtcagatttgtaaagcgtacattcagtaaaaagaaatatgtaaatagctttgaatttcttacatacaatttaacttgaagcaagc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40084678 |
aacaattaataaagagtcagatttgtaaagcgtacattcagt-------aatttgtaaatagctttgaatttctcacatacaatttaacttgaagcaagc |
40084770 |
T |
|
| Q |
505 |
aacattagctctgcctctaagatcatatgtttacatctagggttaagcccccataactagagaaacaaaatatttcatcatttacacaaaattaagagta |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40084771 |
aacattagctctgcctctaagatcatatgtttacatctagggttaagcccccataactagagaaacaaaatatttcatcatttacacaaaattaagagta |
40084870 |
T |
|
| Q |
605 |
atacaagtat |
614 |
Q |
| |
|
|||||||||| |
|
|
| T |
40084871 |
atacaagtat |
40084880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University