View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_42 (Length: 270)
Name: NF2747_high_42
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 35646943 - 35646808
Alignment:
| Q |
117 |
tattgttacataccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatc |
216 |
Q |
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| T |
35646943 |
tattgttacataccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatc |
35646844 |
T |
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| Q |
217 |
attatgctcctcattttcaacatctccatcagatct |
252 |
Q |
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| T |
35646843 |
attatgctcctcattctcaacatctccatcagatct |
35646808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35647059 - 35647012
Alignment:
| Q |
1 |
atattcaatccaccatatatgctagagcaataaatatgcaacaaaagg |
48 |
Q |
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| T |
35647059 |
atattcaatccaccatatatgctagagcaataaatatgcaacaaaagg |
35647012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 35656371 - 35656268
Alignment:
| Q |
114 |
tgatattgttacataccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaa |
213 |
Q |
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| T |
35656371 |
tgatattattacttacaagtatcaaagccttgattgaaattctatcaattgggaagcccatagcattagtcttttgaagcgaaagcaaaacatccacaaa |
35656272 |
T |
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| Q |
214 |
atca |
217 |
Q |
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|||| |
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| T |
35656271 |
atca |
35656268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 35642004 - 35641914
Alignment:
| Q |
127 |
taccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatca |
217 |
Q |
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|||||||| |||| |||| ||||||||| ||||||| ||||||||| ||||| |||||||||| ||||| |||| |||||||||||| |
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| T |
35642004 |
taccagtaacaaacccttaattgcagttctatcaattgaaaagccagcagcattgctcttttgaactgaaagcaaaatgtccacaaaatca |
35641914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 35649340 - 35649250
Alignment:
| Q |
127 |
taccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatca |
217 |
Q |
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|||||||| |||| |||| ||||||||| ||||||| || |||| | || ||| |||||||||| ||||| ||||| |||||||||||| |
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| T |
35649340 |
taccagtaacaaacccttaattgcagttctatcaattgagaagctagtatcattgctcttttgaactgaaagcaaaacgtccacaaaatca |
35649250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 35677420 - 35677330
Alignment:
| Q |
127 |
taccagtatcaaagccttgattgcagttttatcaatggaaaagccaatagcatcagtcttttgaacagaaagtaaaacatccacaaaatca |
217 |
Q |
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|||||||| |||| |||| ||||||||| ||||||| || |||| | || ||| |||||||||| ||||| ||||| |||||||||||| |
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| T |
35677420 |
taccagtaacaaacccttaattgcagttctatcaattgagaagctagtatcattgctcttttgaactgaaagcaaaacgtccacaaaatca |
35677330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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