View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_45 (Length: 263)
Name: NF2747_high_45
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 1250639 - 1250893
Alignment:
| Q |
2 |
ttgtttatttcttgatttcacatatgttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgac |
101 |
Q |
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| T |
1250639 |
ttgtttatttcttgatttcacatatgttcaaatccttgatatccttctatgttaatattagatcatgtgtgattcaagacatttaagaactgttattgac |
1250738 |
T |
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| Q |
102 |
tttggctcctaaatgtgtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgagga-gg |
200 |
Q |
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| T |
1250739 |
tttggctcctaaatgtgtgcaatggcgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacattgaggatcg |
1250838 |
T |
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| Q |
201 |
tacgtacgtttctacacattttgttcttatgttttcacttgataacacctatgct |
255 |
Q |
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| T |
1250839 |
tacgtacatttctacacattttgttcttatgttttcacttggtaacatctatgct |
1250893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 8269398 - 8269587
Alignment:
| Q |
1 |
cttgtttatttcttgatttcacatatgttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattga |
100 |
Q |
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| T |
8269398 |
cttgtttatttcttgatttcccatatgttcaaatccttgacttccttctattttaatat-agatcatgtgggattcaagacatttaggaactgttattga |
8269496 |
T |
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| Q |
101 |
ctttggctcctaaatgtgtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaaca |
191 |
Q |
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| T |
8269497 |
ctttggctcccaaatgcatgcaatgacggttgaagatcggccacaactatgtggaacaacatccttggggatgggcggattcggtaaaaca |
8269587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 8287812 - 8287898
Alignment:
| Q |
118 |
gtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgaggaggtacg |
204 |
Q |
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| T |
8287812 |
gtgcaatgacagtcgaagatcagtcacaactatgtggatcgacatccttaggcatgggtggattcggtaaaacatcgaggaggtacg |
8287898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 8275035 - 8275072
Alignment:
| Q |
204 |
gtacgtttctacacattttgttcttatgttttcacttg |
241 |
Q |
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| T |
8275035 |
gtacatttctacacattttgttcttctgttttcacttg |
8275072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 26585307 - 26585364
Alignment:
| Q |
133 |
aagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaac |
190 |
Q |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaaac |
26585364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 20507413 - 20507332
Alignment:
| Q |
28 |
ttcaaatccttgatatccttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcc |
110 |
Q |
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| T |
20507413 |
ttcaaatccttgatatccttctatatgaata-taggtcaggtgggattcaagacatttaggaactgatgttgactttggctcc |
20507332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 17231896 - 17231932
Alignment:
| Q |
204 |
gtacgtttctacacattttgttcttatgttttcactt |
240 |
Q |
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|||| |||||||||||||||||||| ||||||||||| |
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| T |
17231896 |
gtacatttctacacattttgttcttctgttttcactt |
17231932 |
T |
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