View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_49 (Length: 257)
Name: NF2747_high_49
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_49 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 10036 - 9806
Alignment:
| Q |
5 |
aagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagagagt |
104 |
Q |
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| T |
10036 |
aagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagagagt |
9937 |
T |
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| Q |
105 |
cttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtgggtgctgctccacgaagtgttggatgg |
204 |
Q |
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| T |
9936 |
cttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggtgctgctccacgaagtgttggatgg |
9837 |
T |
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| Q |
205 |
gtggtcgaaggagagtggtagcttgaaagat |
235 |
Q |
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| T |
9836 |
gtggtcggaggagagtggtagcttgaaagat |
9806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 6052 - 5822
Alignment:
| Q |
5 |
aagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagagagt |
104 |
Q |
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| T |
6052 |
aagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaaacagagagaaaccgttgaaactgagt |
5953 |
T |
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| Q |
105 |
cttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtgggtgctgctccacgaagtgttggatgg |
204 |
Q |
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| T |
5952 |
ctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgggtgctgctccacgaagtgttggatgg |
5853 |
T |
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| Q |
205 |
gtggtcgaaggagagtggtagcttgaaagat |
235 |
Q |
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| T |
5852 |
gtggttggaggagagtggtggcttgaaagat |
5822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 948 - 812
Alignment:
| Q |
57 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaat |
156 |
Q |
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| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
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| Q |
157 |
ccgtcacgatgcaatccggtgggtgctgctccacgaa |
193 |
Q |
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| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 48911880 - 48911669
Alignment:
| Q |
11 |
aggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagagagtcttgga |
110 |
Q |
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| T |
48911880 |
aggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctagga |
48911781 |
T |
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| Q |
111 |
atttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgtcacgatgcaatccggtgggtgctgctccacgaagtgttggatgggtggtc |
210 |
Q |
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| T |
48911780 |
atttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtgggtgctgctccacgaagtgttggatggttggtc |
48911681 |
T |
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| Q |
211 |
gaaggagagtgg |
222 |
Q |
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| T |
48911680 |
ggagtagagtgg |
48911669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 48951927 - 48952063
Alignment:
| Q |
57 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaat |
156 |
Q |
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| T |
48951927 |
gattccatggcacatatggtaaagagtgagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagctcatcagcccacgggaataaaaaat |
48952026 |
T |
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| Q |
157 |
ccgtcacgatgcaatccggtgggtgctgctccacgaa |
193 |
Q |
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| T |
48952027 |
ccgccacgatgcaatcaggtgggtgctgctccacgaa |
48952063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 48974787 - 48974857
Alignment:
| Q |
57 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgc |
127 |
Q |
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| T |
48974787 |
gattccatggcacatatggcaaagagtgagaaaccgttgaaggcgagtctgggaatgtgaagtctgtttgc |
48974857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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