View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_5 (Length: 602)
Name: NF2747_high_5
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_5 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 602
Target Start/End: Complemental strand, 41081780 - 41081188
Alignment:
| Q |
17 |
caaggtacgtaacacatttccttcaccaaatcca------ctttgaagtaaggagaaaattttacaccgtaccaggagcacgtgcacacgagagtagaca |
110 |
Q |
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| T |
41081780 |
caaggtacgtaacacaattccttcaccaaatccaaatccactttgaagtaaggagaaaattttacaccgtaccaggagcacgtgcacacgagagtagaca |
41081681 |
T |
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| Q |
111 |
atggacaagtagacacagatctgctattggaatttcagtttcagtacgatctaattgataacactactttactttcaattgaatctctttctttcaactg |
210 |
Q |
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| T |
41081680 |
atggacaagtagacacagatctgttattggaatttcaatttcagtacgatctaattgataacactacttt-----caattgaatctctttctttcaactg |
41081586 |
T |
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| Q |
211 |
tttacaattatattggctctgaattatctccaacaaattcaaacaagcccttcaagtttgaatatggaatctattttttagaaaaaggtagtacgtttta |
310 |
Q |
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| T |
41081585 |
tttgcaattatattggctctgaattatctccaacaaattcaaacaagcccttcaagtttgaatatggaatctattttttagaaaaaggtagtacgtttta |
41081486 |
T |
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| Q |
311 |
tcagaaacttgcacg----aagtaaattgcaagatggatttgataatggtcgg-------tggtagaagaagaaatcatcaaacaccatgttgcatcgta |
399 |
Q |
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| T |
41081485 |
tcagaaatttgcacgaattaagtaaattgcaagatggatttgataatggtcggtgggacttgggagaagaagaaatcatcaaacaccatgttgcatcgta |
41081386 |
T |
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| Q |
400 |
ttattgaaaggacgtgtaaattgagnnnnnnnccctttctcttttgcatcaattaatgcaatcttagttgaacattaatatagctagcaactctctcaat |
499 |
Q |
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| T |
41081385 |
ttattgaaaggacgtgtaaattgagtttttttccctttctcttttgcatcaattaatgcaatcttagttgaacattaata----tagcaactctctcaat |
41081290 |
T |
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| Q |
500 |
taaattttttaactttaatatacatttaatttgttaaaaatcagtactttacagaaaacccttaatttgtcatagtgcaagagtttacttcttctcactc |
599 |
Q |
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| T |
41081289 |
taaattttttaactttaatatacatttaatttgttaaaaatcagtactttacagaaaacccttaatttgtcatagtgcaagagtttacttcttc-cactc |
41081191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 98912 - 98562
Alignment:
| Q |
17 |
caaggtacgtaacacatttccttcaccaaatcca------ctttgaagtaaggagaaaattttacaccgtaccaggagcacgtgcacacgagagtagaca |
110 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98912 |
caaggtacgtaacacaattccttcaccaaatccaaatccactttgaagtaaggagaaaattttacaccgtaccaggagcacgtgcacacgagagtagaca |
98813 |
T |
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| Q |
111 |
atggacaagtagacacagatctgctattggaatttcagtttcagtacgatctaattgataacactactttactttcaattgaatctctttctttcaactg |
210 |
Q |
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| T |
98812 |
atggacaagtagacacagatctgttattggaatttcaatttcagtacgatctaattgataacactacttt-----caattgaatctctttctttcaactg |
98718 |
T |
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| Q |
211 |
tttacaattatattggctctgaattatctccaacaaattcaaacaagcccttcaagtttgaatatggaatctattttttagaaaaaggtagtacgtttta |
310 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98717 |
tttgcaattatattggctctgaattatctccaacaaattcaaacaagcccttcaagtttgaatatggaatctattttttagaaaaaggtagtacgtttta |
98618 |
T |
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| Q |
311 |
tcagaaacttgcacg----aagtaaattgcaagatggatttgataatggtcggtgg |
362 |
Q |
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| T |
98617 |
tcagaaatttgcacgaattaagtaaattgcaagatggatttgataatggtcggtgg |
98562 |
T |
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