View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_57 (Length: 239)
Name: NF2747_high_57
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 39553536 - 39553743
Alignment:
| Q |
13 |
aatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553536 |
aatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattatt |
39553635 |
T |
|
| Q |
113 |
gattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgcttggaactaccaccattattgtttgagttggctagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553636 |
gattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgcttggaactaccaccattattgtttgagttggctagt |
39553735 |
T |
|
| Q |
213 |
gactgcat |
220 |
Q |
| |
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|||||||| |
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| T |
39553736 |
gactgcat |
39553743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 39543517 - 39543724
Alignment:
| Q |
13 |
aatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543517 |
aatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattatt |
39543616 |
T |
|
| Q |
113 |
gattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgcttggaactaccaccattattgtttgagttggctagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
39543617 |
gattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgtttggaactaccaccattattgtttgagttggcaagt |
39543716 |
T |
|
| Q |
213 |
gactgcat |
220 |
Q |
| |
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|||||||| |
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|
| T |
39543717 |
gactgcat |
39543724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 39586643 - 39586808
Alignment:
| Q |
13 |
aatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattatt |
112 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |
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| T |
39586643 |
aatacgaactcataaactcttctttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactatt |
39586742 |
T |
|
| Q |
113 |
gattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagcgctt |
178 |
Q |
| |
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| ||||||| ||| ||||||||||||||||||||||||||||| || || |||||||||||||| |
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| T |
39586743 |
ggttgaagcggctgatgcaaccattttccacaagaaagcagaaaacgattcaagttttgagcgctt |
39586808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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