View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_58 (Length: 238)
Name: NF2747_high_58
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 52482106 - 52482188
Alignment:
| Q |
140 |
aattatttggcatgtttctttccatgatatgaacagcatgtaccatgatctaatatatgttaatatatggcacaggaaatttt |
222 |
Q |
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| T |
52482106 |
aattatttggcatgtttctttccatgatatgaacagcatgtaccatgatctaatatatgttaatatatggcacaggaaatttt |
52482188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52482029 - 52482110
Alignment:
| Q |
1 |
cagttcaacttgttgtataaataagcactgttttggatatatttcccccctaaaactatgatgcatcatttcttagtaatta |
82 |
Q |
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| T |
52482029 |
cagttcaacttgttgtataaataagcactgttttggatatatttcccccctaaaactatgatgcatcatttcttagtaatta |
52482110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 16407564 - 16407449
Alignment:
| Q |
108 |
catctatatacagaaaatttgacatctgtagcaattatttggcatgtttctttccatgatatgaacagcatgtaccatgatctaatatatgtta-atata |
206 |
Q |
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| T |
16407564 |
catcaatatacagaaaaattgccatcgttggcaattatttgtcatgttcctttcccttatgtaaactgcgtggacgatgatctaatatatgttagatata |
16407465 |
T |
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| Q |
207 |
tggcacaggaaatttt |
222 |
Q |
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| T |
16407464 |
tcacgcaggaaatttt |
16407449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 41478864 - 41478929
Alignment:
| Q |
136 |
tagcaattatttggcatgtttctttccatgatatgaacagcatgtaccatgatctaatatatgtta |
201 |
Q |
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| T |
41478864 |
tagcacttatttggcatgtttgtttccctgatatgaactgcatggaccatgatctaatatatgtta |
41478929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 41471863 - 41471928
Alignment:
| Q |
136 |
tagcaattatttggcatgtttctttccatgatatgaacagcatgtaccatgatctaatatatgtta |
201 |
Q |
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| T |
41471863 |
tagcacttatttggcatgtttgtttccctgatatgaactgcatgggccatgatctaatatatgtta |
41471928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 40753119 - 40753206
Alignment:
| Q |
136 |
tagcaattatttggcatgtttctttccatgatatgaacagcatgtaccatgatctaatatatgtta-atatatggcacaggaaatttt |
222 |
Q |
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| T |
40753119 |
tagcacttatttggcatatttgtttccctgctatgaactgcataaaccatgatctaatatatgttagatatatcacacaggaaatttt |
40753206 |
T |
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