View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_60 (Length: 238)
Name: NF2747_high_60
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_60 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 8047333 - 8047115
Alignment:
| Q |
17 |
acaatctgtaaagttataatttgaagcgaaaaagtacgttattatatctcaaagtaattaatctataagcttatgctaattttatactaatagatatttt |
116 |
Q |
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| T |
8047333 |
acaatctgtaaagttataatttgaagcgaaaaagtacgttattatatctcaaagtaattaatctataagcttatgctaatttta---taatagatatttt |
8047237 |
T |
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| Q |
117 |
agtagtacc-taccataaatcagatttctccagttgttcgaagaattcaatcaatgannnnnnnngaaaaaggaattccttcaatgattgattatgaaca |
215 |
Q |
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| T |
8047236 |
agtagtaccttaccataaatcagacttctccagttgttcgaagaattcaatcaatgattttttttgaaaaaggaattccttcaatgattgattatgaaca |
8047137 |
T |
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| Q |
216 |
tctttatctttatatatataaat |
238 |
Q |
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| T |
8047136 |
t-tttatctttatatatataaat |
8047115 |
T |
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