View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_8 (Length: 535)
Name: NF2747_high_8
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 115709 - 115540
Alignment:
| Q |
6 |
cacagactcggatttagaaaatagagacgtagagtgtcgttctttgaaaaaatcaacttagaatacgtacgcagcatcattttaattttagggtcttatc |
105 |
Q |
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| T |
115709 |
cacagactcggatttagaaaatagagacgtagagtgtcgttctttgaaaaa-tcaatttagaatacgtacgcagcatcattttaattttagggtcttatc |
115611 |
T |
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| Q |
106 |
ttaatcatctcctttccccgcaacttatcacatttggctaatgcaggaaacatttcacatcaacacatcat |
176 |
Q |
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| T |
115610 |
ttaatcatctcctttccccgcaacttatcacatttggctaatgcaggaaacatttcacatcaacacatcat |
115540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 115426 - 115258
Alignment:
| Q |
175 |
atatggctcttaatttgataataactctgcatgaaactttaaaatatatatccaatcaagactatgaccatagtggagatagagacag--agaggtagtc |
272 |
Q |
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| T |
115426 |
atatggctcttaatttgataataactctgcatgaaactttaaaatatatatccaatcaagactatgaccatagtggagatagagacagagagaggtagtc |
115327 |
T |
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| Q |
273 |
accaatcaagatagagaataaaacattagactatagttatgtggcaacaggtgttaagattgaaaacga |
341 |
Q |
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| T |
115326 |
accaatcaagatagagaataaaacattagactatagttatgtggcaacaggtgttaagattgaaaacga |
115258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 367 - 496
Target Start/End: Complemental strand, 115215 - 115084
Alignment:
| Q |
367 |
agacccgacttatttgagcagtttacttctatccactgtcaatttgtgaaactcaatttgaagtcggaaaacatagt--tgtattgactcatccttcaga |
464 |
Q |
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| T |
115215 |
agacccgacttatctgagcagtttactcctacctgctgtcattttgtgaaactcaatttaaagtcggaaaacatagttctgtattgactcatccttcaaa |
115116 |
T |
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| Q |
465 |
attggcatcaagagaaatcaaatttaaatctt |
496 |
Q |
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| T |
115115 |
attggcatcaagagaaatcaaatctaaatctt |
115084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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