View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_10 (Length: 525)
Name: NF2747_low_10
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 35026277 - 35026767
Alignment:
| Q |
18 |
acaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaaca |
117 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
35026277 |
acaaaccaagttacaacatctcaacctaaacccaaatctcatcactttttaccctctcaatgttcctcacattgatggtcttcccgatggtgctgaaaca |
35026376 |
T |
|
| Q |
118 |
tcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaa |
217 |
Q |
| |
|
||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026377 |
tcttcagatgtacccttttctttagtccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaa |
35026476 |
T |
|
| Q |
218 |
tagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaatattggataacaagtccattttcaatatctta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026477 |
tagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaatattggataacaagtccattttcaatatctta |
35026576 |
T |
|
| Q |
318 |
tttttggaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccaccttcagggtaccctgatggttctatcaagctttat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35026577 |
tttttggaatggaccaagacatagccaaggaaaaggattaactgtagatgatctcaagaaaccaccttcagggtaccctgatggttctatcaagctttat |
35026676 |
T |
|
| Q |
418 |
caacatgaacttcaatttctgtcttcaacaaggaaacttgtcttcggaagtggtgtatttttatacgatcgtttgcatataggtacaagtt |
508 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026677 |
caacatgaacttcaatttctatcttcaacaaggaaacttgtcttcggaagtggtgtatttttatacgatcgtttgcatataggtacaagtt |
35026767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 108 - 287
Target Start/End: Complemental strand, 34998770 - 34998591
Alignment:
| Q |
108 |
tgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaacta |
207 |
Q |
| |
|
||||||||| |||||||||| || ||| |||||||||||||||||||||||| ||||| ||||| || |||||||||||| |||||| ||||||||| |
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|
| T |
34998770 |
tgctgaaactacttcagatgtaccctcttctttattccctcttattgctacagccatggaccaaactgagaaacaaattgaatctcttctaaaggaacta |
34998671 |
T |
|
| Q |
208 |
aacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
287 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |
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|
| T |
34998670 |
aagccacaaatagttttctttgattttcaatattggctaccaaacttgactcaaaaacttggtatcaaaagtcttcaata |
34998591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 35019368 - 35019105
Alignment:
| Q |
24 |
caagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttca |
123 |
Q |
| |
|
|||||||||||||||||| ||| | ||||| || || || |||| |||| ||| |||||||| || |||| ||||| | |||||||||| ||||| |
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| T |
35019368 |
caagttacaacatctcaatcttcatccaaatcttattacgtttttccctatcacagttcctcatgttaatggccttcctcataatgctgaaacaacttca |
35019269 |
T |
|
| Q |
124 |
gatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaatagttt |
223 |
Q |
| |
|
||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||| |||| ||||||||||||| |
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|
| T |
35019268 |
gatgtgccattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagttaaagccacaaatagttt |
35019169 |
T |
|
| Q |
224 |
tctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
287 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||| |
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|
| T |
35019168 |
tctttgattttcaatattggctacctaacttgactcaaaaacttggtatcaaaagtcttcaata |
35019105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 108 - 287
Target Start/End: Complemental strand, 35012258 - 35012079
Alignment:
| Q |
108 |
tgctgaaacatcttcagatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaacta |
207 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||| || |
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|
| T |
35012258 |
tgctgaaacaacttcagatgtgccattttctttattccctcttattgctacagccatggatcaaacagataaacaaattgaacttcttttgaaggagtta |
35012159 |
T |
|
| Q |
208 |
aacccacaaatagttttctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
287 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||| |
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|
| T |
35012158 |
aagccacaaatagttttctttgattttcaatattggctacctaacttgactcaaaaacttggtatcaaaagtcttcaata |
35012079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 35033292 - 35033555
Alignment:
| Q |
24 |
caagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaacatcttca |
123 |
Q |
| |
|
|||||||||| ||||||| ||| | ||||| || || || |||| |||| ||| |||||||| || |||||||||| ||| |||||||||| ||||| |
|
|
| T |
35033292 |
caagttacaatatctcaatctttatccaaatcttattacctttttccctatcacagttcctcatgttaatggtcttcctcttgatgctgaaacaacttca |
35033391 |
T |
|
| Q |
124 |
gatgttcctccttttttattccctcttattgctacagcaatggatcaaacagaaaaacaaattgaacatcttcttaaggaactaaacccacaaatagttt |
223 |
Q |
| |
|
||||| || || |||| ||||||||||||||||||| |||||||||||||| || | |||||| |||||| || ||| |||| ||||||||||||| |
|
|
| T |
35033392 |
gatgtgcccttttctttagtccctcttattgctacagccatggatcaaacagagaaggatattgaaattcttctcaaagaaataaagccacaaatagttt |
35033491 |
T |
|
| Q |
224 |
tctttgattttcaatattggcttccaaatttgactcaaaaacttggcataaaaagtcttcaata |
287 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||| |||| |||| ||| |||||||| ||||| |
|
|
| T |
35033492 |
tctttgacttccaatattggcttccaaagttgactaaaaaccttgacatcaaaagtctgcaata |
35033555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 35036920 - 35036810
Alignment:
| Q |
18 |
acaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttggtgctgaaaca |
117 |
Q |
| |
|
||||||||| ||| |||| |||||||| | ||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
35036920 |
acaaaccaaattagaacaattcaacctttatccaaatctcatcactttttaccctctcaatgttcctcacattcatggtcttccatttggtgctgaaacc |
35036821 |
T |
|
| Q |
118 |
tcttcagatgt |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
35036820 |
acttcagatgt |
35036810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 36288555 - 36288675
Alignment:
| Q |
8 |
ccaagaatatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttgg |
107 |
Q |
| |
|
||||||| | ||||||||||||| || | |||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||| || || |||||||| |
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|
| T |
36288555 |
ccaagaaaacacaaaccaagttagaaaaattcaacctttacccaaaccttatcaccttttaccctctcaatgttcctcacattgaaggcctaccctttgg |
36288654 |
T |
|
| Q |
108 |
tgctgaaacatcttcagatgt |
128 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
36288655 |
cgctgaaaccacttcagatgt |
36288675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 35009003 - 35009123
Alignment:
| Q |
8 |
ccaagaatatacaaaccaagttacaacatctcaaccttaacccaaacctcatcactttttaccctctcagtgttcctcacattgatggtcttccctttgg |
107 |
Q |
| |
|
||||||| | ||||||||| ||| |||| |||||||| | ||||| | ||||||||||||||||||| ||||||||| ||| |||||||||| ||||| |
|
|
| T |
35009003 |
ccaagaaaacacaaaccaaattagaacaattcaacctttatccaaatttaatcactttttaccctctcaatgttcctcatattcatggtcttccatttgg |
35009102 |
T |
|
| Q |
108 |
tgctgaaacatcttcagatgt |
128 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
35009103 |
tgctgaaaccacttcagatgt |
35009123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 505
Target Start/End: Original strand, 35033634 - 35033773
Alignment:
| Q |
366 |
tgatctcaagaaaccaccttcagggtaccctgatggttctatcaagctttatcaacatgaacttcaatttctgtcttcaacaaggaaacttgtcttcgga |
465 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||| || |||||| ||||| |||| ||||||| ||| || |||||||||||||| ||| || ||| |
|
|
| T |
35033634 |
tgatatcatgaaaccaccttcagggttccctgattcttgcatcaagttttataaacacgaacttcgattcctagcttcaacaaggaaaattgcatttgga |
35033733 |
T |
|
| Q |
466 |
agtggtgtatttttatacgatcgtttgcatataggtacaa |
505 |
Q |
| |
|
|||||||| || |||| ||||||||||| || ||||||| |
|
|
| T |
35033734 |
agtggtgttttcttatttgatcgtttgcacattggtacaa |
35033773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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