View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_16 (Length: 416)

Name: NF2747_low_16
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_16
NF2747_low_16
[»] chr5 (1 HSPs)
chr5 (1-407)||(22789710-22790117)
[»] chr3 (2 HSPs)
chr3 (1-407)||(54565175-54565583)
chr3 (53-387)||(44491261-44491597)
[»] chr4 (3 HSPs)
chr4 (175-403)||(6612773-6613002)
chr4 (56-215)||(27014775-27014935)
chr4 (364-406)||(42329441-42329483)
[»] chr6 (5 HSPs)
chr6 (338-403)||(20916447-20916512)
chr6 (338-403)||(20916803-20916868)
chr6 (338-403)||(20926382-20926447)
chr6 (264-406)||(11609276-11609418)
chr6 (56-128)||(20926659-20926731)
[»] chr1 (3 HSPs)
chr1 (338-403)||(41327631-41327696)
chr1 (338-403)||(41337862-41337927)
chr1 (64-128)||(41328747-41328811)
[»] chr8 (1 HSPs)
chr8 (320-405)||(29383184-29383269)
[»] scaffold0381 (1 HSPs)
scaffold0381 (56-215)||(4848-5008)


Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 22789710 - 22790117
Alignment:
Q  1 atcaagtacctcctgcgtgaaaccattaatcaaccaactaggttggaggttccttcctcttttttcacttgcattcatcatgtcgttaaaatcacccaga 100  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  22789710 atcaagtaccgcctgcctgaaaccattaatcaaccaactaggtcggaggttccttcctcttttttcacttgcatccatgatgtcgttaaaatcacccaga 22789809  T
Q  101 atacaccatggtcctgcaaactgattagccagaaatttaaggaaatccgacgcagctcgcctacgcctccttcagggtacccgtagtaaccggtgaatct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22789810 atacaccatggtcctgcaaactgattagccagaaatttaaggaaatccaacgcatctcgcctacgcctccttcagggtacccgtagtaaccggtgaatct 22789909  T
Q  201 ccaaacaccatgaac-gaatcaacaacgtcgacagaaatatgattatttgaatagtttacaatctgacagttaaaagaagcgcgccaaaataatgcaagg 299  Q
    ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22789910 ccaaacaccttgaacagaatcaacaacgtctacagacatatgattatttgaatagtttacaatctgacagttaaaagaagcgcgccaaaataatgcaagg 22790009  T
Q  300 ccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaactta 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22790010 ccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctcactta 22790109  T
Q  400 agaataat 407  Q
    ||||||||    
T  22790110 agaataat 22790117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 54565175 - 54565583
Alignment:
Q  1 atcaagtacctcctgcgtgaaaccattaatcaaccaactaggttggaggttccttcctcttttttcacttgcattcatcatgtcgttaaaatcacccaga 100  Q
    |||||| ||| | ||| |||||||| ||||||||||| |||   | ||||||||||||||||||| |||||||| ||| |||||||||||||||||||      
T  54565175 atcaagaaccgcttgcctgaaaccactaatcaaccaattagaccgaaggttccttcctctttttttacttgcatccataatgtcgttaaaatcacccatg 54565274  T
Q  101 atacaccatggtcctgcaaactgattagccagaaatttaaggaaatccgacgcagctcgcctacg-cctccttcagggtacccgtagtaaccggtgaatc 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | || |||||||||||||||||||| ||  |||| |    
T  54565275 atacaccaaggtcctgcaaactgattagccagaaatttaaggaaatcccacgctgctcgcctatgtcccccttcagggtacccgtagtagccaatgaacc 54565374  T
Q  200 tccaaacaccatgaacg-aatcaacaacgtcgacagaaatatgattatttgaatagtttacaatctgacagttaaaagaagcgcgccaaaataatgcaag 298  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||  | ||| ||||||||||||||||||| || |||||||||||||||||    
T  54565375 tccaaacaccatgaacggaatcaacaacgtcaacagaaatatgattatttgagcaatttgcaatctgacagttaaaagaggcacgccaaaataatgcaag 54565474  T
Q  299 gccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaactt 398  Q
    ||||||||||||||||  ||||||||||||||| ||  |||||||| |||||| || ||||| |||||||||||||||||| ||||||||||||| ||||    
T  54565475 gccaccacttctaccagtacaatcaacagaaaaacaaaaatcaaaatcaagcacgtaacgtagagcttcaattttattacgatggactaatgtctcactt 54565574  T
Q  399 aagaataat 407  Q
    || ||||||    
T  54565575 aaaaataat 54565583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 387
Target Start/End: Complemental strand, 44491597 - 44491261
Alignment:
Q  53 cttcctcttttttcacttgcattcatcatgtcgttaaaatcacccagaatacaccatggtcctgcaaactgattagccagaaatttaaggaaatccgacg 152  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||  || ||||| || || | ||| ||||||| || |     |||||||||| |||    
T  44491597 cttcctcttttttcacctgcatccattatgtcgttaaaatcacccaagatgcaccaaggcccggtaaattgattagacaaattacgaaggaaatcccacg 44491498  T
Q  153 cagctcgcctacgcctcc-ttcagggtacccgtagtaaccggtgaatctccaaacaccatgaac-gaatcaacaacgtcgacagaaatatgattatttga 250  Q
    ||  ||  | ||| | || ||||||||||||||||||||||||||  ||||| | |||| |||| ||||| | ||| || ||| | |||||||| | |||    
T  44491497 caagtcttcgacgtccccgttcagggtacccgtagtaaccggtgagcctccacaaaccaagaacagaatccataacatcaacatatatatgattttgtga 44491398  T
Q  251 atagtttacaatctgacagttaaaagaagcgcgccaaaataatgcaaggccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagc 350  Q
    |||||| ||||| ||||| ||||| || |||||||||||||| |||||||| || | |||||||   | ||||| |||||||||  ||||||| ||||||    
T  44491397 atagttaacaatttgacaattaaaggacgcgcgccaaaataaagcaaggcctccgcctctaccaattcgatcaaaagaaaagcaaaaatcaaagccaagc 44491298  T
Q  351 aggtgacgtaaagcttcaattttattacggtggacta 387  Q
    | || ||||||  ||||||||||||| ||||||||||    
T  44491297 aagtaacgtaattcttcaattttatttcggtggacta 44491261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 403
Target Start/End: Complemental strand, 6613002 - 6612773
Alignment:
Q  175 gggtacccgtagtaaccggtgaatctccaaacaccatgaac-gaatcaacaacgtcgacagaaatatgattatttgaatagtttacaatctgacagttaa 273  Q
    |||||||||||||||||||||| |||||||  ||||||||| ||||||| ||  || || | |||||||||||| ||||| || |||| |   || |||     
T  6613002 gggtacccgtagtaaccggtgagtctccaagtaccatgaacagaatcaaaaaattcaactgtaatatgattattagaataattaacaagcatgcaattag 6612903  T
Q  274 aagaagcgcgccaaaataatgcaaggccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaatttt 373  Q
    |||| |  ||||||||||| |||||||||||||| |||||    |||||||| ||||| ||  ||||||||||||||| || ||||||| ||||||||||    
T  6612902 aagaggtacgccaaaataaagcaaggccaccactcctaccggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacgtaaaacttcaatttt 6612803  T
Q  374 attacggtggactaatgtctaacttaagaa 403  Q
    ||| |||   |||| ||||| |||||||||    
T  6612802 atttcgggatactagtgtctcacttaagaa 6612773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 27014775 - 27014935
Alignment:
Q  56 cctcttttttcacttgcattcatcatgtcgttaaaatcacccagaatacaccatggtcctgcaaactgattagccagaaattt--aaggaaatccgacgc 153  Q
    |||||||||||||| |||| ||| || || || |||||||| || || ||||| || |||| ||||||||||  || || | |  |||||||||| ||||    
T  27014775 cctcttttttcactagcatccattatatcattgaaatcaccaaggatgcaccaagggcctgtaaactgatta--cataactgtcgaaggaaatcccacgc 27014872  T
Q  154 agctcgcctacg-cctccttcagggtacccgtagtaaccggtgaatctccaaacaccatgaac 215  Q
    |   |||||||| || |||||||||||||||||||| ||||||| |||||||  |||||||||    
T  27014873 aagacgcctacgtcccccttcagggtacccgtagtatccggtgagtctccaaggaccatgaac 27014935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 42329483 - 42329441
Alignment:
Q  364 cttcaattttattacggtggactaatgtctaacttaagaataa 406  Q
    |||||||||||||||||||||||||||||| |||||| |||||    
T  42329483 cttcaattttattacggtggactaatgtctcacttaaaaataa 42329441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 20916512 - 20916447
Alignment:
Q  338 atcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaacttaagaa 403  Q
    |||||||||||||| || ||||||| ||||||||||||| |||||||||||| ||| |||||||||    
T  20916512 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaa 20916447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 20916868 - 20916803
Alignment:
Q  338 atcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaacttaagaa 403  Q
    |||||||||||||| || ||||||| ||||||||||||| |||||||||||| ||| |||||||||    
T  20916868 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaa 20916803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 20926447 - 20926382
Alignment:
Q  338 atcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaacttaagaa 403  Q
    ||||||||||||||  | |||| || ||||||||||||| |||||||||||| ||| |||||||||    
T  20926447 atcaaaaccaagcaaataacgtcaatcttcaattttatttcggtggactaatatctcacttaagaa 20926382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 406
Target Start/End: Original strand, 11609276 - 11609418
Alignment:
Q  264 tgacagttaaaagaagcgcgccaaaataatgcaaggccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaag 363  Q
    ||||| |||| ||||| ||||||||| || ||||| || || ||||||||    |  ||||||||||| ||| | ||||||||||| |  | || |||      
T  11609276 tgacaattaagagaagtgcgccaaaagaaagcaagaccgccgcttctaccggttcggtcaacagaaaaacatgagtcaaaaccaagaacataacataatt 11609375  T
Q  364 cttcaattttattacggtggactaatgtctaacttaagaataa 406  Q
    |||||||||| |||||||||||||||||||  ||||| |||||    
T  11609376 cttcaatttttttacggtggactaatgtctctcttaaaaataa 11609418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 20926731 - 20926659
Alignment:
Q  56 cctcttttttcacttgcattcatcatgtcgttaaaatcacccagaatacaccatggtcctgcaaactgattag 128  Q
    ||||||||||||||||||| ||  || || |||||||| || | |||||||| ||||| |||||| |||||||    
T  20926731 cctcttttttcacttgcatccaaaatatcattaaaatcgccaaaaatacaccgtggtcttgcaaattgattag 20926659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 41327696 - 41327631
Alignment:
Q  338 atcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaacttaagaa 403  Q
    |||||||||||||| || ||||||| ||||||||||||| |||||||||||| ||| |||||||||    
T  41327696 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaa 41327631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 41337927 - 41337862
Alignment:
Q  338 atcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaacttaagaa 403  Q
    |||||||||||||| || ||||||| ||||||||||||| |||||||||||| ||| |||||||||    
T  41337927 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaa 41337862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 41328811 - 41328747
Alignment:
Q  64 ttcacttgcattcatcatgtcgttaaaatcacccagaatacaccatggtcctgcaaactgattag 128  Q
    ||||||||||| ||  || || |||||||| || | ||||||||||||||||||||| |||||||    
T  41328811 ttcacttgcatccaaaatatcattaaaatcgccaaaaatacaccatggtcctgcaaattgattag 41328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 29383269 - 29383184
Alignment:
Q  320 atcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaattttattacggtggactaatgtctaacttaagaata 405  Q
    ||||||| |||||||  |||||||||| ||||  | ||||||| ||||||||||||| |||||||||| ||||| |||||| ||||    
T  29383269 atcaacataaaagcaagaatcaaaacccagcaaataacgtaaatcttcaattttatttcggtggactagtgtctcacttaaaaata 29383184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 5008 - 4848
Alignment:
Q  56 cctcttttttcacttgcattcatcatgtcgttaaaatcacccagaatacaccatggtcctgcaaactgattagccagaaattt--aaggaaatccgacgc 153  Q
    |||||||||||||| |||| ||| || || || |||||||| || || ||||| || |||| ||||||||||  || || | |  |||||||||| ||||    
T  5008 cctcttttttcactagcatccattatatcattgaaatcaccaaggatgcaccaagggcctgtaaactgatta--cataactgtcgaaggaaatcccacgc 4911  T
Q  154 agctcgcctacg-cctccttcagggtacccgtagtaaccggtgaatctccaaacaccatgaac 215  Q
    |   |||||||| || |||||||||||||||||||| ||||||| |||||||  |||||||||    
T  4910 aagacgcctacgtcccccttcagggtacccgtagtatccggtgagtctccaaggaccatgaac 4848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University