View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_17 (Length: 415)
Name: NF2747_low_17
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 37673330 - 37672940
Alignment:
| Q |
14 |
aaattcaaagagagatatacatttgttgtgctattattgtaaggttctaattctccatacatcttcaattggaatttacctagttttatttaacctcaat |
113 |
Q |
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| T |
37673330 |
aaattcaaagagagatatacatttgttgtgctattattgtaaggttctaattctccatacatcttcaattggattttacctagttttatttaacctcaat |
37673231 |
T |
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| Q |
114 |
ggaaattttgtttatgtactgtgaagtgtgaacctattggaaattttattggactaaatcttgtttaccgaataggctcaaaattaccgcaaattcaact |
213 |
Q |
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| T |
37673230 |
ggaaattttgtttatgtactgtgaagtgtgaacctattggaaattttattggactaaatcttgtttaccgaataggctcaaaattaccgcaaattcaact |
37673131 |
T |
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| Q |
214 |
tacttatctcacaaaattccttgtcaagtaataataattcattaacaaattcaaaaccaaagaagggcagcttgcaatgagtaatagaaaaatcagaatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37673130 |
tacttatctcacaaaattccttgtcaagtaataataattcattaacaaattcaaaaccaaagaagggcagcttgcaatgagtaatagaaaaatcagaatg |
37673031 |
T |
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| Q |
314 |
caccatgttttcattaagtcaattttcattaatagaaacacatactttaaagatattattaaactgtaaaacacaaaatgaaactagaaat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37673030 |
caccatgttttcattaagtcaattttcattaatagaaacacatactttaaagatattattaaactgtaaaacacaaaatgaaactagaaat |
37672940 |
T |
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