View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2747_low_18 (Length: 393)
Name: NF2747_low_18
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 13656970 - 13657351
Alignment:
| Q |
1 |
tgcatggttttgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaatttaagt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13656970 |
tgcatggtattgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaatttaagt |
13657069 |
T |
|
| Q |
101 |
tgtgcccccacacgagggtcggcctaagagtaaggttaccaaagcctctgatttagatctaccaacaaaaattatttttcattaaattttacaaacaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
13657070 |
tgtgcccccacacgagggtcggcctaagagtaaggtcaccaaagtctctgatttagatctaccaacagaaattatttttcattagattttacaaacaata |
13657169 |
T |
|
| Q |
201 |
attctaac--nnnnnnnnggctaatgtattgaatcttactttaggcatcacttacttttaataaaatttgggttggctctgccccatactcagatgatat |
298 |
Q |
| |
|
|||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13657170 |
attctaacaaaaaaaaaaggctcatatattgaattttactttaagcatcacttacttttaataaaatttgggttggctctgccccatacacagatgatat |
13657269 |
T |
|
| Q |
299 |
ttatgacttcaaaataaaaagacggacgagccaaacttaaaattgtatttttagatgtcttctttcttctaagttcatgttc |
380 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| | | || ||||||||||||||| ||||||||| |
|
|
| T |
13657270 |
ttatgactttaaaataaaaagacggacgagccaaacataaaattgtatatctggacatcttctttcttctaacttcatgttc |
13657351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 13715612 - 13715993
Alignment:
| Q |
1 |
tgcatggttttgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcagtcatttgtgtatcaatacacaaaatttaagt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13715612 |
tgcatggtattgcagcaatggtacacgacacaaagtggtggacatgttgaccatggcagtagtaatcactcatttgtgtatcaatacacaaaatttaagt |
13715711 |
T |
|
| Q |
101 |
tgtgcccccacacgagggtcggcctaagagtaaggttaccaaagcctctgatttagatctaccaacaaaaattatttttcattaaattttacaaacaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
13715712 |
tgtgcccccacacgagggtcggcctaagagtaaggtcaccaaagtctctgatttagatctaccaacagaaattatttttcattagattttacaaacaata |
13715811 |
T |
|
| Q |
201 |
attctaac--nnnnnnnnggctaatgtattgaatcttactttaggcatcacttacttttaataaaatttgggttggctctgccccatactcagatgatat |
298 |
Q |
| |
|
|||||||| |||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13715812 |
attctaacaaaaaaaaaaggctcatatattgaattttactttaagcatcacttacttttaataaaatttgggttggctctgccccatacacagatgatat |
13715911 |
T |
|
| Q |
299 |
ttatgacttcaaaataaaaagacggacgagccaaacttaaaattgtatttttagatgtcttctttcttctaagttcatgttc |
380 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| | | || ||||||||||||||| ||||||||| |
|
|
| T |
13715912 |
ttatgactttaaaataaaaagacggacgagccaaacataaaattgtatatctggacatcttctttcttctaacttcatgttc |
13715993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 26765191 - 26765152
Alignment:
| Q |
152 |
tttagatctaccaacaaaaattatttttcattaaatttta |
191 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
26765191 |
tttagacccaccaacaaaaattatttttcattaaatttta |
26765152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 18732314 - 18732352
Alignment:
| Q |
161 |
accaacaaaa-attatttttcattaaattttacaaacaa |
198 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18732314 |
accaacaaaacattatttttcattaaattttacaaacaa |
18732352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 41872461 - 41872428
Alignment:
| Q |
165 |
acaaaaattatttttcattaaattttacaaacaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
41872461 |
acaaaaattatttttcattaaattttataaacaa |
41872428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University