View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_19 (Length: 389)

Name: NF2747_low_19
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_19
NF2747_low_19
[»] chr1 (4 HSPs)
chr1 (6-383)||(36395715-36396093)
chr1 (6-86)||(44719938-44720018)
chr1 (6-79)||(11060191-11060265)
chr1 (6-86)||(1408223-1408303)
[»] chr5 (2 HSPs)
chr5 (10-82)||(23772958-23773030)
chr5 (6-86)||(28864751-28864831)
[»] chr6 (2 HSPs)
chr6 (15-86)||(33986888-33986959)
chr6 (6-79)||(11074633-11074701)
[»] chr8 (5 HSPs)
chr8 (6-86)||(9625944-9626024)
chr8 (6-86)||(31074581-31074661)
chr8 (6-84)||(28525348-28525427)
chr8 (45-86)||(28005937-28005978)
chr8 (45-86)||(28063240-28063281)
[»] chr4 (2 HSPs)
chr4 (18-86)||(24752997-24753065)
chr4 (6-86)||(24745520-24745600)
[»] chr2 (3 HSPs)
chr2 (6-86)||(18675650-18675730)
chr2 (6-84)||(14886927-14887005)
chr2 (6-83)||(26585789-26585867)
[»] chr7 (1 HSPs)
chr7 (13-86)||(330486-330559)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 36395715 - 36396093
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagctccaacctcctagtatggtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36395715 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagctccaacctcctagtatggtt 36395814  T
Q  106 aatcaacatgttataattttgagacattcatatactattttaacaatgcttgagaggctaaatgaaatttgctcaacgtactccaataaaatttctttat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36395815 aatcaacatgttataattttgagacattcatatactattttaacaatgcttgagaggctaaatgaaatttgctcaaagtactccaataaaatttctttat 36395914  T
Q  206 ctttttgaaagtgttcctcttgaaaatcccctactagctccttaatctaatggcctgtatatcgtaaagaa-tttgattaataatgtcctgttttgtctg 304  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  36395915 ctttttgaaagtgttccttttgaaaatcccctactagctccttaatctaatggcctgtatatcgtaaataattttgattaataatgtcctgttttgtctg 36396014  T
Q  305 tgtatcgtatagaattttgattaataatgtcctgttctgtctgtatatcgtttagaattttgactaataatggtctgtg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36396015 tgtatcgtatagaattttgattaataatgtcctgttctgtctgtatatcgtatagaattttgactaataatggtctgtg 36396093  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 44719938 - 44720018
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  44719938 attccttcatagtttcttctttttaatctcgatgttaacttcaaattatactatttcattttataagaaagattattagct 44720018  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 11060191 - 11060265
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcatt-cattttttaagaaagatt 79  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||  |||||||||||||||||    
T  11060191 attccttcatggtttcttctttttaatctcaaggttaacttcaaattatactatttaaattttttaagaaagatt 11060265  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 1408223 - 1408303
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactca-ttcattttttaagaaagattattagct 86  Q
    |||||||||| || | ||||||||| |||||||||||||||||||||||  ||| ||||||||||| |||||||||||||||    
T  1408223 attccttcattgtcttttctttttattctcaatgttaacttcaaattat-gtcatttcattttttatgaaagattattagct 1408303  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 23773030 - 23772958
Alignment:
Q  10 cttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattatt 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  23773030 cttcatggtttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattatt 23772958  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 28864831 - 28864751
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||| |||||  |||||||||||| | ||||||||||||    
T  28864831 attcgttcttggtttcttctttttaatttcaatgttaacttcaaatcatactatttcattttttaaaagagattattagct 28864751  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 33986959 - 33986888
Alignment:
Q  15 tggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  33986959 tggtttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagct 33986888  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 11074701 - 11074633
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagatt 79  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||     |||||||||||||||||    
T  11074701 attccttcatgctttcttctttttaatcttaatattaactttaaattatact-----attttttaagaaagatt 11074633  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 9626024 - 9625944
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||| |  |||||||||||||||| ||||||||||    
T  9626024 attcctccatggtttcttctttttaatcttaatgttaacttcaaattatattgtttcattttttaagaaaaattattagct 9625944  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 31074581 - 31074661
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||||||||  ||| |||||||||||||||||||||||    
T  31074581 attccttcatggtttcttctttataatctcgacgttaacttcaaattatactgtttcgttttttaagaaagattattagct 31074661  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 28525348 - 28525427
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattca-ttttttaagaaagattattag 84  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  28525348 attccttcatagtttcttctttttaatcttaatgttaacttcaaattatactatttcatttttttaagaaagattattag 28525427  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 28005937 - 28005978
Alignment:
Q  45 ttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||||||||||||  || ||||||||||||||||||||||||    
T  28005937 ttcaaattatactattttattttttaagaaagattattagct 28005978  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 28063240 - 28063281
Alignment:
Q  45 ttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||||||||||||  || ||||||||||||||||||||||||    
T  28063240 ttcaaattatactattttattttttaagaaagattattagct 28063281  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 24753065 - 24752997
Alignment:
Q  18 tttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  24753065 tttcttctttttaatctcaatgttaacttcaaattatactatttcattttctaagaaagattattagct 24752997  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 24745600 - 24745520
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||| ||||  |||||||||||||||||| ||||||||    
T  24745600 attcctttatggtttcttctttttaatctcaatgttaattttaaattgtactatttcattttttaagaaagactattagct 24745520  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 18675650 - 18675730
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    ||||||||||||||||||||||||||||||||| |||||||||  |||||||  ||||||| |||||||||||||||||||    
T  18675650 attccttcatggtttcttctttttaatctcaatattaacttcaggttatactatttcatttcttaagaaagattattagct 18675730  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 14886927 - 14887005
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattag 84  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||||| |||  || ||||||||||||| ||||||||    
T  14886927 attccttcataatttctcctttttaatctcaatgttaacttcaaattacactattttattttttaagaaatattattag 14887005  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 26585867 - 26585789
Alignment:
Q  6 attccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattca-ttttttaagaaagattatta 83  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||  || | ||||||||||||||||||||    
T  26585867 attccgtcatggtttcttctttttaatctcaatgtcaactttaaattatactattttatttttttaagaaagattatta 26585789  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 330559 - 330486
Alignment:
Q  13 catggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 86  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| || ||||||||||    
T  330559 catggtttcttctttttaatttcaatgttaacttcaaattatactatttcattttttaaggaatattattagct 330486  T

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