View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_2 (Length: 665)
Name: NF2747_low_2
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_2 |
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| [»] scaffold1211 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 246 - 655
Target Start/End: Original strand, 26376522 - 26376931
Alignment:
| Q |
246 |
tttaatgttgtctccatgtctaattgtcttgtttcatatttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggca |
345 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26376522 |
tttaatgttgtctccatgtctaattgttttgtttcttatttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggca |
26376621 |
T |
|
| Q |
346 |
agaatgatagaattgagcccgacgtccaatacatactatggtacttacagattcacttttattaacagcaaactatttattgtttcatttttattgttgg |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26376622 |
agaatgatagaattgagcccgacgtccaatacatactatggtacttacagattcatttttattaacagcaaactatttattgtttcatttttattgctgg |
26376721 |
T |
|
| Q |
446 |
tctttcattgttatgatggaaaacatgaaattcaccgctaatggtgattttctgttgttagatcatcaattgattttgtttgctcatccacctacaggta |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26376722 |
tctttcattgttatgatggaaaacatgaaattcaccgctaatggtgattttctgttgttagatcatcaattgattttgtttgctcatccacctacaggta |
26376821 |
T |
|
| Q |
546 |
gagcattggctattttcagatcaaaagatgcagctgcaaacgcaatatctgagttgaacaggagatgccttattcttgaagacgggaggtatttcattta |
645 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26376822 |
gagcattggctattttcagatcaaaagatgcaggtgcaaacgcaatatctgagttgaacaggagatgccttattcttgaagacgggaggtatttcattta |
26376921 |
T |
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| Q |
646 |
tcactttctt |
655 |
Q |
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| T |
26376922 |
tcgctttctt |
26376931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 26376095 - 26376326
Alignment:
| Q |
20 |
gtcgtttgaagttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatgcaatagagtttgaaaaatgttgtgtg |
119 |
Q |
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| T |
26376095 |
gtcgtttgaagttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatgcaatagagtttgaaaaatgttgtgtg |
26376194 |
T |
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| Q |
120 |
ggattgtgtcgtgtggattcataatcatgtaactgaaacgtaaatggatatgatggatgtacccatctgttgagagatgaattacttcaccctagaactc |
219 |
Q |
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| T |
26376195 |
ggattgtgtcgtgtggattcataatcgtgtaactgaaacataaatggatatgatggatgtacccatctgttgagagatgaattacttcaccctagtactc |
26376294 |
T |
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| Q |
220 |
tctccactctttattatgtttgttcgtttaat |
251 |
Q |
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| T |
26376295 |
tctccactctttattatgtttgttcgtttaat |
26376326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 262 - 626
Target Start/End: Original strand, 505 - 869
Alignment:
| Q |
262 |
tgtctaattgtcttgtttcatatttacttttcttcacttgttgaggaccttgtttggcatgcactcaaagaaaaggttgaggcaagaatgatagaattga |
361 |
Q |
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||||||||||||| |||| |||||| |||| | ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
505 |
tgtctaattgtctcatttcttatttatttttttccacttgttgaggatcttgtttggcatgcgctcaaagaaaaggttgaggcaaggatgatagaattga |
604 |
T |
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| Q |
362 |
gcccgacgtccaatacatactatggtacttacagattcacttttattaacagcaaactatttattgtttcatttttattgttggtctttcattgttatga |
461 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| || ||||||||| ||| | ||||||||||||||||||| |||||| |||| | || |
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| T |
605 |
gcccgacgtccaatacatactatggtacttacagatttattttcatgaacagcaaattatatcatgtttcatttttattgttgatctttctttgtaacga |
704 |
T |
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| Q |
462 |
tggaaaacatgaaattcaccgctaatggtgattttctgttgttagatcatcaattgattttgtttgctcatccacctacaggtagagcattggctatttt |
561 |
Q |
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|||||||||| ||||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||| |
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| T |
705 |
tggaaaacatcaaattcaaaactaatgataattttctgttgttagatcatcaactgattttgtttgctcatctaccgacaggtagagcattggttatttt |
804 |
T |
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| Q |
562 |
cagatcaaaagatgcagctgcaaacgcaatatctgagttgaacaggagatgccttattcttgaag |
626 |
Q |
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| T |
805 |
cagatcaaaagatgcagctgaaaatgcaatatctgagttgaccagcagatgccttgttcttgaag |
869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 86 - 194
Alignment:
| Q |
20 |
gtcgtttgaagttgaggtatctaggatccaacttttcctcccattctaatatagttttggaagtacctttgatgcaatagagtttgaaaaatgttgtgtg |
119 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||| | |||||||||||||||| |
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| T |
86 |
gtcgtttgaagtagaggtatctaggatccaactttttctcccgttctaatatagtttcgaaagtacctttgatgcaatagaatatgaaaaatgttgtgtg |
185 |
T |
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| Q |
120 |
ggattgtgt |
128 |
Q |
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|| |||||| |
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| T |
186 |
gggttgtgt |
194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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