View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_20 (Length: 375)
Name: NF2747_low_20
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 44109195 - 44109539
Alignment:
| Q |
15 |
cacagatactaaatgttttgccaaaccattttccgacagaaagaggagaatgtgctatctacacttagaatcgatacaagattggagtcttgaagtgtaa |
114 |
Q |
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| T |
44109195 |
cacagatactaaatgttttgccaaaccattttccaacagaaagaggagaatgtgctatctacacttagaatcgatacaagattggagtcgtgaagtgtaa |
44109294 |
T |
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| Q |
115 |
tagttggaggttggtaataactgtcagcatctcaagaaataatttgcctcttcaaagctatatgtctcacaaagttggatgaaagtgatttggatttttg |
214 |
Q |
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| T |
44109295 |
tagttggaggttggtaataactgtctgcatctcaagaaataatttgcctcttcaaagctatatgtctctcaaagttggatgaaagtgatttgaatttttg |
44109394 |
T |
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| Q |
215 |
taataactgtacagaatgcaaaacatcaatgtggatctgtatcaacatgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagt |
314 |
Q |
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| T |
44109395 |
taataactgtacagaatgcaaaacatcaatgtggatctgtatcaacctgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagt |
44109494 |
T |
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| Q |
315 |
gtcaagtctctcgcactatcagcgaacgctttgaaggtatgtatt |
359 |
Q |
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| T |
44109495 |
gtcaagtctctcgcactatcagcaaacgctttgaaggtatgtatt |
44109539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 43760251 - 43760320
Alignment:
| Q |
162 |
ctcttcaaagctatatgtctcacaaagttggatgaaagtgatttggatttttgtaataactgtacagaat |
231 |
Q |
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| T |
43760251 |
ctcttcaaagctatctgcctctcaaagtttgatgaaagtgatttgaatttttgtaataactgaacagaat |
43760320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 44146716 - 44146781
Alignment:
| Q |
15 |
cacagatactaaatgttttgccaaaccattttccgacagaaagaggagaatgtgctatctacactt |
80 |
Q |
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| T |
44146716 |
cacaggtactaaatgttttgccaaagcatttcccgacagaaagagaagaacgtgctatctacactt |
44146781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 40450897 - 40450838
Alignment:
| Q |
276 |
tctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatca |
335 |
Q |
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| T |
40450897 |
tctccttattcggttgtgctactgagtggacttgcaagtgtcaagtctcttacactatca |
40450838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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