View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_21 (Length: 374)
Name: NF2747_low_21
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 45040555 - 45040891
Alignment:
| Q |
21 |
atgagatttttgaatgaattccacttaaatgggatgttggttaaatgttcttgtcgcacaaggtaagaacctttcatctttgacacagagtaacactcaa |
120 |
Q |
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| T |
45040555 |
atgagatttttgaatgaattccacttaaatgggatgttggttaaatgttcttgtcgcacaaggtaagaacctttcatctttgacacagagtaacactcta |
45040654 |
T |
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| Q |
121 |
tttagaaataagaagatcaatatcgatgtgattattgatcaaattaggatttatgtttggcggtggattaaagtaaatatgaagggcttcaatcacgact |
220 |
Q |
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| T |
45040655 |
tttagaaataagaagatcaatatcgatgtgattattttttaaattaggatttatgtttggcgatggattaaagtaaatatgaagggcttcaatcacgact |
45040754 |
T |
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| Q |
221 |
taaatatttgagagagtaatttgttgaagtgtcctaggtactttgactatgtcccttagcgacgtcttctctttggctcaagttttcccccttcaattta |
320 |
Q |
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| T |
45040755 |
taaatatttaacagagtaatttgttgaagtgtcctaggtactttgactatgtcccttagcgacgtcttctctttggctcaagttttcccccttcaattta |
45040854 |
T |
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| Q |
321 |
gtctattggtggaaaaccactagccttgtgttgtaat |
357 |
Q |
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| T |
45040855 |
gtctattggtggaaaaccactagccttgtgttgtaat |
45040891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 45041490 - 45041807
Alignment:
| Q |
25 |
gatttttgaatgaattccacttaaatgggatgttggttaaatgttcttgtcgcacaaggtaagaacctttcatctttgacacagagtaacactcaattta |
124 |
Q |
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| T |
45041490 |
gatttttgaatgaattccactcaaatggaatgttggttaaaggttcttactgcacaaggtaataaccttttatctttaacacggagtaaacctctatttg |
45041589 |
T |
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| Q |
125 |
gaaataagaagatcaatatcgatgtgattattgatcaaattaggatttatgtttggcggtggattaaagtaaatatgaagggcttcaatcacgacttaaa |
224 |
Q |
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| T |
45041590 |
gaaacaagaagatcgatattaatgaaattat----caaattaagattcatatttggtggcggattaaagtaaatgtgaagtactgcaattacaacttaaa |
45041685 |
T |
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| Q |
225 |
tatttgagagagtaatttgttgaagtgtcctaggtactttgactatgtcccttagcga---cgtcttctctttggctcaag-ttttcccccttcaattta |
320 |
Q |
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| T |
45041686 |
tctttgag-gagtaatttgttgaagtgtcctaggtattttgaccatgtccctcagtgatttcttcttctctttggctcaagtttttcccctttcaattta |
45041784 |
T |
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| Q |
321 |
gtctattggtggaaaaccactag |
343 |
Q |
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| T |
45041785 |
gtgtattggtggaaaaccactag |
45041807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 45040353 - 45040401
Alignment:
| Q |
21 |
atgagatttttgaatgaattccacttaaatgggatgttggttaaatgtt |
69 |
Q |
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| T |
45040353 |
atgagatttttgaatgaattccactcaaatgggactttggttaaatgtt |
45040401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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