View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_26 (Length: 343)

Name: NF2747_low_26
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_26
NF2747_low_26
[»] chr8 (8 HSPs)
chr8 (49-196)||(37211417-37211564)
chr8 (194-335)||(37211690-37211831)
chr8 (30-151)||(37202028-37202148)
chr8 (215-309)||(37217393-37217487)
chr8 (26-78)||(37217058-37217110)
chr8 (93-127)||(37183081-37183115)
chr8 (93-127)||(37194213-37194247)
chr8 (244-305)||(37180252-37180313)
[»] chr2 (2 HSPs)
chr2 (26-191)||(414696-414864)
chr2 (26-101)||(7527169-7527244)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 37211417 - 37211564
Alignment:
Q  49 ttttaaatgatcaatcaggttaacaaataagcaaatctataaggcacattcatatggaaattcaaatcaccatgcataaatacttcgccataatcttaca 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37211417 ttttaaatgatcaatcaggttaacaaataagcaaatctataaggcacattcatatggaaattcaaatcaccatgcataaatacttcgccataatcttaca 37211516  T
Q  149 ctttgccaccaaattccacgagtaattgttcaagtcacgcatgcatga 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37211517 ctttgccaccaaattccacgagtaattgttcaagtcacgcatgcatga 37211564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 194 - 335
Target Start/End: Original strand, 37211690 - 37211831
Alignment:
Q  194 tgacatcttttactctttgagatgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaactt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37211690 tgacatcttttactctttgagatgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaactt 37211789  T
Q  294 ctctgacaattccttcaacttctcagacactttcttcttctc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37211790 ctctgacaattccttcaacttctcagacactttcttcttctc 37211831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 37202028 - 37202148
Alignment:
Q  30 cactcatctcatgcaaacattttaaatgatcaatcaggttaacaaataagcaaatctataaggcacattcatatggaaattcaaatcaccatgcataaat 129  Q
    ||||||||||||||||||||||| ||||||||| ||||| | ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  37202028 cactcatctcatgcaaacatttttaatgatcaaccaggtcatcaaataaacaaatctataaggc-cattcatatggaaattcaaatcactatgcataaat 37202126  T
Q  130 acttcgccataatcttacactt 151  Q
    |||| || ||||||||||||||    
T  37202127 acttggctataatcttacactt 37202148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 37217393 - 37217487
Alignment:
Q  215 atgttttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatcacatattgctttcaacttctctgacaattccttc 309  Q
    |||| |||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||   |||||||||||||||| | |||||||    
T  37217393 atgtcttggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatcacatacaactttcaacttctctgaaagttccttc 37217487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 37217058 - 37217110
Alignment:
Q  26 ataccactcatctcatgcaaacattttaaatgatcaatcaggttaacaaataa 78  Q
    ||||||||||||||||||| ||||||| | ||||||||||||| | |||||||    
T  37217058 ataccactcatctcatgcagacatttttagtgatcaatcaggtcaccaaataa 37217110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 37183081 - 37183115
Alignment:
Q  93 cacattcatatggaaattcaaatcaccatgcataa 127  Q
    ||||||||||||||||||||||||||| |||||||    
T  37183081 cacattcatatggaaattcaaatcaccgtgcataa 37183115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 37194213 - 37194247
Alignment:
Q  93 cacattcatatggaaattcaaatcaccatgcataa 127  Q
    ||||||||||||||||||||||||||| |||||||    
T  37194213 cacattcatatggaaattcaaatcaccgtgcataa 37194247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 37180252 - 37180313
Alignment:
Q  244 gtcaatctctctttccaatcagcctctttatcacatattgctttcaacttctctgacaattc 305  Q
    |||||||| ||||| ||| ||| ||||||| |||||||| ||| ||| ||||||||||||||    
T  37180252 gtcaatctttctttgcaagcagtctctttaacacatatttcttccaaattctctgacaattc 37180313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 414864 - 414696
Alignment:
Q  26 ataccactcatctcatgcaaacattttaaatgatcaatcaggttaa-caaataagcaaatctataaggcacattcatatggaaattcaaatcaccatgca 124  Q
    |||||| |||||||||||||||||||| |||||||||||| |   | ||  ||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  414864 ataccaatcatctcatgcaaacatttttaatgatcaatcatgcccatcatttaagcaaatgtataaggcacattcatatgaagattcaaatcaccatgca 414765  T
Q  125 taaatacttcgccataatcttacac-tttgccaccaaa-ttccacgagtaattgttcaagtcacgcatg 191  Q
    ||||||||| |  |||||||||||| ||| | |||||| |||||| ||||| ||||||||||| |||||    
T  414764 taaatactttgttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatg 414696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 7527169 - 7527244
Alignment:
Q  26 ataccactcatctcatgcaaacattttaaatgatcaatcaggttaacaaataagcaaatctataaggcacattcat 101  Q
    ||||||| || |||||||||||||| | ||||||||||||||| | ||||||||||||| |||||||||| |||||    
T  7527169 ataccacacacctcatgcaaacattattaatgatcaatcaggtcagcaaataagcaaatttataaggcacgttcat 7527244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University