View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2747_low_27 (Length: 341)
Name: NF2747_low_27
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 26942816 - 26943132
Alignment:
| Q |
1 |
ctccttcaagacttgttgccgttcgtccaacaacaacagttccaagtgatttccaaacaaagtgagtgtttagctcatgtctagaacaaacattgtgaac |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26942816 |
ctccttcaagacttgttgtcgttcgtccaac---aacagttccaagtcatttccagacaaagtgagtgtttagctcatgtctagagcaaacattgtgaac |
26942912 |
T |
|
| Q |
101 |
tcgtgttggtcttagtttagaaccctagctcatgccaatgtgtgatgatccttcatgaggagtccatgttctctgtcccccgtacttagcagctccagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
26942913 |
tcgtgttggtcttagtttagaaccctagctcatgccaatgtgtgatgatccttcatgaggagtccatgttctctgtcccccgtatttagcaggtccagat |
26943012 |
T |
|
| Q |
201 |
cctcaacgtctttgcccactacgaattcatgtttttatgaaaatacaaagcatcttgataccgactttcattttgttagagaagaaatccaagttgactt |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26943013 |
cctcaacgtctttgcccactacgaaatcatgtttttatgaaaatacaaagcatcttgataccgactttcattttgttagagaagaaatccaagttgactt |
26943112 |
T |
|
| Q |
301 |
gtttcatcttttgtatgtac |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26943113 |
gtttcatcttttgtatgtac |
26943132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University