View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_28 (Length: 335)
Name: NF2747_low_28
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 45040916 - 45041229
Alignment:
| Q |
16 |
cacgttttatgtcagatttaagacgtttttgttttaatatttttaggccttgttgagggtcgactcttagcccaattttcattatctcttaagaaacatt |
115 |
Q |
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| T |
45040916 |
cacgtcttatgccagatttaagacgtttttgttttaatatttttaggccttgttgagggtcgactcttagcccaattttcattatctcctaagaaacatt |
45041015 |
T |
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| Q |
116 |
ccaagaaaaataatgtttttgaaacaannnnnnnnagnnnnnnnngttgtttgagagtcttattttgggagaaaatatattattaggcaataaaaccgtg |
215 |
Q |
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| T |
45041016 |
ccaagaaaaataatgtttttgaaacaattttttttagaaaaaaaagttgtttgagagtcttattttgggagaaaatatattattaggcaataaaaccgtg |
45041115 |
T |
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| Q |
216 |
gggttttctactttgaggacctatgcaaagaggaccctttatctttggaatttttaggcccttgacacgttgattgtggccaagtttttatcccaaaaat |
315 |
Q |
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| T |
45041116 |
gggttttctactttgaggacctatgcaaagaggaccctttatctttggaatttttaggcccttgacacgttgattgtggccaagtttttatcccaaaaat |
45041215 |
T |
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| Q |
316 |
tgacagctctctgc |
329 |
Q |
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| T |
45041216 |
tgacagctctctgc |
45041229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 45041865 - 45041927
Alignment:
| Q |
42 |
ttttgttttaatatttttaggccttgttgagggtcgactcttagcccaattttcattatctct |
104 |
Q |
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| T |
45041865 |
ttttgttttaatatttttaagccctgttgagggtcgactcttagcctaatttccatcatctct |
45041927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 45042047 - 45042096
Alignment:
| Q |
218 |
gttttctactttgaggacctatgcaaagaggaccctttatctttggaattt |
268 |
Q |
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| T |
45042047 |
gttttctactttgaggacctatgcaaacaggacac-ttatctttggaattt |
45042096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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