View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_30 (Length: 329)

Name: NF2747_low_30
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_30
NF2747_low_30
[»] chr5 (2 HSPs)
chr5 (4-91)||(196251-196338)
chr5 (4-91)||(200630-200717)
[»] chr3 (3 HSPs)
chr3 (4-91)||(22361183-22361270)
chr3 (4-91)||(22365570-22365657)
chr3 (16-68)||(23397192-23397244)
[»] chr2 (1 HSPs)
chr2 (7-91)||(1330736-1330820)
[»] chr8 (3 HSPs)
chr8 (4-91)||(30045289-30045376)
chr8 (4-91)||(30049692-30049779)
chr8 (4-91)||(7162644-7162731)
[»] chr4 (2 HSPs)
chr4 (4-91)||(3941547-3941634)
chr4 (4-91)||(3945946-3946033)
[»] scaffold1453 (1 HSPs)
scaffold1453 (13-91)||(3-81)
[»] chr7 (2 HSPs)
chr7 (6-91)||(39949403-39949488)
chr7 (13-91)||(39953795-39953873)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 196338 - 196251
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  196338 agcataggctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 196251  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 200717 - 200630
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  200717 agcataggctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 200630  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 22361183 - 22361270
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  22361183 agcataggctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 22361270  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 22365570 - 22365657
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||    
T  22365570 agcataggctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatgatatgtatcaaatttgcagtatagtaa 22365657  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 23397244 - 23397192
Alignment:
Q  16 gtcattactaagtatttgactataagtatgtaagaaggatatatggatggtat 68  Q
    ||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||    
T  23397244 gtcattactaagtatttgactctaaatatgtaagaaagatgtatggatggtat 23397192  T

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Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 1330736 - 1330820
Alignment:
Q  7 ataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||    
T  1330736 ataggttgagtcattagtaagtatttgactataagtatgtaagaaggatgtaaggatggtatgtatcaaatttgcagcatagtaa 1330820  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 30045289 - 30045376
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  30045289 agcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 30045376  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 30049692 - 30049779
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  30049692 agcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 30049779  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 7162644 - 7162731
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||    
T  7162644 agcataggctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtttgtattaaatttgcagcatagtaa 7162731  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 3941547 - 3941634
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  3941547 agcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 3941634  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 3945946 - 3946033
Alignment:
Q  4 agcataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  3945946 agcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 3946033  T

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Target: scaffold1453 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 3 - 81
Alignment:
Q  13 tgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  3 tgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaa 81  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 39949488 - 39949403
Alignment:
Q  6 cataggttgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||  |||||| |||||||||||    
T  39949488 cataggctgagttattactaagtatttggctataagtatgtaagaaggatgtatggatgatatataaaaaatttgcagcatagtaa 39949403  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 39953873 - 39953795
Alignment:
Q  13 tgagtcattactaagtatttgactataagtatgtaagaaggatatatggatggtatgtatcaaatttacagcatagtaa 91  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||  |||||| |||||||||||    
T  39953873 tgagttattactaagtatttggctataagtatgtaagaaggatgtatggatgatatataaaaaatttgcagcatagtaa 39953795  T

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