View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_31 (Length: 326)
Name: NF2747_low_31
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 3 - 305
Target Start/End: Complemental strand, 25545398 - 25545096
Alignment:
| Q |
3 |
aagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaacacaaatctttagaaagtaa |
102 |
Q |
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| T |
25545398 |
aagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaacacaaatctttagaaagtaa |
25545299 |
T |
|
| Q |
103 |
tcaatactatcaccaagagctagttagaatccacagcttgttctacgcaaactgcaaagtaaaactccgatggttaacccgacaaaagaccaaatggcag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545298 |
tcaatactatcaccaagagctagttagaatccacagcttgttctccgcaaactgcaaagtaaaactccgatggttaacccgacaaaagaccaaatggcag |
25545199 |
T |
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| Q |
203 |
caagaatatgagagagcagcagatacacagaaaaggaaccgaaggaatcaatggcataatccaactcaaccaaaatagattgggaaacaaactatgaaac |
302 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545198 |
caagaatatgagagagcagcaggtacacagaaaaggaaccgaaggaatcaatggcataatccaactcaaccaaaatagattgggaaacaaactatgaaac |
25545099 |
T |
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| Q |
303 |
atc |
305 |
Q |
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||| |
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| T |
25545098 |
atc |
25545096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 155 - 300
Target Start/End: Original strand, 1154496 - 1154641
Alignment:
| Q |
155 |
tgcaaagtaaaactccgatggttaacccgacaaaagaccaaatggcagcaagaatatgagagagcagcagatacacagaaaaggaaccgaaggaatcaat |
254 |
Q |
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||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||| |
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| T |
1154496 |
tgcaaagtaaaactccgatggttaacctggcaaaagaccaaacggcagcaagaatatgatagagcagtagttacacagaaaaggaaccgaaggaattaat |
1154595 |
T |
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| Q |
255 |
ggcataatccaactcaaccaaaatagattgggaaacaaactatgaa |
300 |
Q |
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| T |
1154596 |
ggcataatccaacacaaccaaaatagattgggaaacaaactatgaa |
1154641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 1155160 - 1155121
Alignment:
| Q |
149 |
gcaaactgcaaagtaaaactccgatggttaacccgacaaa |
188 |
Q |
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||||||||||||||||||||||||| ||||||||| |||| |
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| T |
1155160 |
gcaaactgcaaagtaaaactccgatagttaacccggcaaa |
1155121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 38041457 - 38041406
Alignment:
| Q |
2 |
gaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagtt |
53 |
Q |
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||||||||||||| || |||| ||||||||||| | |||||||||||||||| |
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| T |
38041457 |
gaagagttgtatccgcaacttctggaattaacagaggggtatgcaaagagtt |
38041406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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