View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_33 (Length: 307)
Name: NF2747_low_33
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_33 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 106 - 307
Target Start/End: Complemental strand, 45343138 - 45342942
Alignment:
| Q |
106 |
cacggccacagttaaaacttaaaactccccacgtgcggttcctctaactaaccatggttaaatccaatccaaccccacaaatctaaaagactaaaacaaa |
205 |
Q |
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| T |
45343138 |
cacggccacagttaaaacttaaaactccccacgtgcggttcctctaactaaccatggttaaatccaa-----ccccccaaatctaaaagactaaaacaaa |
45343044 |
T |
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| Q |
206 |
cacctccttcattttcaatcttatagtctgaaaaacacaaagcataaggcaattcagatattctgacaatgcatacgtatagcaaaggtgggtggtaggg |
305 |
Q |
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| T |
45343043 |
accctccttcattttcaattttatagtctgaaaaacacaaagcataaggcaattcagatattctgacaatgcatacgtatagcaaaggtgggtggtaggg |
45342944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45343226 - 45343171
Alignment:
| Q |
1 |
aaggcgcatttgctttggtagctcatcattaaccaaagagaatgtgaatgatacta |
56 |
Q |
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| T |
45343226 |
aaggcgcatttgctttggtagctcatcattaaccaaagagaatgtgaatgatacta |
45343171 |
T |
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