View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_35 (Length: 294)
Name: NF2747_low_35
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 44139870 - 44140142
Alignment:
| Q |
8 |
agattattctacacttttcggactcatttgattcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagta |
107 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139870 |
agataattctaaacttttcggactcatttgattcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagta |
44139969 |
T |
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| Q |
108 |
gaaactaattcgtgattatttataatttaaaaaacacattttgatcattattttcatctactacactgacaatcactatttttcctacttttctccttcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139970 |
gaaactaattcgtgattatttataatttaaaaaacacattttgatcattattttcatctactacactgacaatcactatttttcctacttttctccttcc |
44140069 |
T |
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| Q |
208 |
ttgcttaaactacataatttcacaaaaaatactgcattgtatttatcttcatcatcaaatacgttatgctaat |
280 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
44140070 |
tttcttaaactacataatttcacaaaaaatactgtattgtatttatcgtcatcatcaaatacgttatgctaat |
44140142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 50060449 - 50060722
Alignment:
| Q |
8 |
agattattctacacttttcggactcatttgattcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagta |
107 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50060449 |
agataattctaaacttttcggactcatttgattcagattaaaaaagaaaatttacacatcgtatgaaaaatgattctttttaaaaatattatataaagta |
50060548 |
T |
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| Q |
108 |
gaaactaattcgtgattatttataatttaaaaaacacattttgatcattat-tttcatctactacactgacaatcactatttttcctacttttctccttc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50060549 |
gaaactaattcgtgattatttataatttaaaaaacacattttgatcattatctttcatctactacactgacaatcactatttttcctacttttctccttc |
50060648 |
T |
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| Q |
207 |
cttgcttaaactacataatttcacaaaaaatactgcattgtatttatcttcatcatcaaatacgttatgctaat |
280 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
50060649 |
cttacttaaactacataatttcacaaaaaatactgtattgtatttatcgtcatcatcaaatacgttatgctaat |
50060722 |
T |
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