View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2747_low_37 (Length: 285)
Name: NF2747_low_37
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_37 |
 | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0366 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 16440 - 16183
Alignment:
| Q |
15 |
ggtgtcttaaggatgtcttaagaggagtattactaatgaacttttttcagcattcatttaaacacactcaattttattgagtgaaattaatgtgaatcct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16440 |
ggtgtcttaaggatgtcttaagaggagtattattaatgaacttttttcagcattcatttaaacacactcaattttattgagtgaaattaatgtgaatcct |
16341 |
T |
|
| Q |
115 |
acactttaaaaatataattcacttaaaatggtggaacacatatgtttcttccaattnnnnnnngtgtttaagtgagtgttgaaaagagagtattttagca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16340 |
acactttaaaaatataattcacttaaaatggtggaacacatatgtttcttccaattaaaaaaagtgtttaagtgagtgttgaaaagagagtattttagca |
16241 |
T |
|
| Q |
215 |
tttatcgtatcttaaatataatgtggatatgagttttcatcttgaagcgggtattgtt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16240 |
tttatcgtatcttaaatataatgtggatatgagttttcatcttgaagcgggtattgtt |
16183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 39 - 272
Target Start/End: Original strand, 44402224 - 44402457
Alignment:
| Q |
39 |
gagtattactaatgaacttttttcagcattcatttaaacacactcaattttattgagtgaaattaatgtgaatcctacactttaaaaatataattcactt |
138 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
44402224 |
gagtattactaatcaacttttttcagcattcatttaaacacactcaattttattgagtgaaattaatgtgaatcctacactttaaaaatataattcattt |
44402323 |
T |
|
| Q |
139 |
aaaatggtggaacacatatgtttcttccaattnnnnnnngtgtttaagtgagtgttgaaaagagagtattttagcatttatcgtatcttaaatataatgt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44402324 |
aaaatggtggaacacatatgtttcttccaattaaaaaaagtgtttaagtgagtgttgaaaagagagtattttagcatttatcgtatcttagatataatgt |
44402423 |
T |
|
| Q |
239 |
ggatatgagttttcatcttgaagcgggtattgtt |
272 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
44402424 |
ggatatgagttttcatcatgaagcgggtattgtt |
44402457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 44402053 - 44402081
Alignment:
| Q |
15 |
ggtgtcttaaggatgtcttaagaggagta |
43 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44402053 |
ggtgtcttaaggatgtcttaagaggagta |
44402081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 44135378 - 44135419
Alignment:
| Q |
86 |
ttttattgagtgaaattaatgtgaatcctacactttaaaaat |
127 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
44135378 |
ttttattgaatgaaactaatgtgaatcatacactttaaaaat |
44135419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 50055860 - 50055901
Alignment:
| Q |
86 |
ttttattgagtgaaattaatgtgaatcctacactttaaaaat |
127 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
50055860 |
ttttattgaatgaaactaatgtgaatcatacactttaaaaat |
50055901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University