View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_42 (Length: 272)

Name: NF2747_low_42
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_42
NF2747_low_42
[»] chr5 (2 HSPs)
chr5 (162-266)||(22919537-22919641)
chr5 (1-110)||(22919376-22919485)
[»] chr3 (3 HSPs)
chr3 (162-266)||(3523673-3523777)
chr3 (1-54)||(3523513-3523566)
chr3 (72-110)||(3523583-3523621)
[»] chr7 (2 HSPs)
chr7 (187-245)||(18004399-18004457)
chr7 (196-249)||(18004294-18004347)
[»] chr8 (2 HSPs)
chr8 (187-249)||(16804155-16804217)
chr8 (196-249)||(16804053-16804106)
[»] chr1 (1 HSPs)
chr1 (187-249)||(47735457-47735519)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 22919537 - 22919641
Alignment:
Q  162 gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt 261  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  22919537 gggactcatatttttagtcctttttctcaatcttaacagatttgagcttgacagtctttgtagcagacacatctccagcatcagcagaggcagaggaggt 22919636  T
Q  262 gaaat 266  Q
    |||||    
T  22919637 gaaat 22919641  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 22919376 - 22919485
Alignment:
Q  1 acattcgaaccaaaagtctacatcgaccaatccataaaaggacaattattgaacnnnnnnnnnnnnnnnnnttgagttgtaagctcaatattaaccaaag 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||    
T  22919376 acattcgaaccaaaagtctacatagaccaatccataaaaggacaattattgaacaaaattaaaataaaaaattgagttgtaagctcaatattaaccaaag 22919475  T
Q  101 ttttggaatt 110  Q
    ||||||||||    
T  22919476 ttttggaatt 22919485  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 3523673 - 3523777
Alignment:
Q  162 gggactcatatttttagtcctctttctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcagaggcagagggggt 261  Q
    |||||||||| | |||||||| |||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  3523673 gggactcatagtcttagtcctttttctcaatcttaacacatttgagcttgacagtctttatagcagacgcatctccagcatcagcagaggcagagggggt 3523772  T
Q  262 gaaat 266  Q
    |||||    
T  3523773 gaaat 3523777  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3523513 - 3523566
Alignment:
Q  1 acattcgaaccaaaagtctacatcgaccaatccataaaaggacaattattgaac 54  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3523513 acattcgaaccaaaagtctacatcgaccaatccgtataaggacaattattgaac 3523566  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 3523583 - 3523621
Alignment:
Q  72 ttgagttgtaagctcaatattaaccaaagttttggaatt 110  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3523583 ttgagttgtacgctcaatattaaccaaagttttggaatt 3523621  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 18004457 - 18004399
Alignment:
Q  187 ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcag 245  Q
    |||||||||||||||||||||||||| || |||||||||||| | ||||||||||||||    
T  18004457 ctcaatcttaacagatttgagcttgacagactttgtagcagagaaatctccagcatcag 18004399  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 18004347 - 18004294
Alignment:
Q  196 aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 249  Q
    ||||||||||||||||| |  ||| |||||||| ||||||||||||||||||||    
T  18004347 aacagatttgagcttgacaagcttagtagcagagacatctccagcatcagcaga 18004294  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 16804217 - 16804155
Alignment:
Q  187 ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 249  Q
    ||||||||||||| |||||||||||| || |||||||| ||| | ||||||||||||||||||    
T  16804217 ctcaatcttaacatatttgagcttgacaggctttgtagtagagaaatctccagcatcagcaga 16804155  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 16804106 - 16804053
Alignment:
Q  196 aacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 249  Q
    ||||||||||||||||| || ||| |||||||| |||||| || ||||||||||    
T  16804106 aacagatttgagcttgacaggcttagtagcagagacatctacaacatcagcaga 16804053  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 47735519 - 47735457
Alignment:
Q  187 ctcaatcttaacagatttgagcttgagagtctttgtagcagacacatctccagcatcagcaga 249  Q
    |||||||||||||||||||||||||| || ||| |||||||| | ||||||||||||| ||||    
T  47735519 ctcaatcttaacagatttgagcttgacaggcttcgtagcagagaaatctccagcatcaacaga 47735457  T

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