View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2747_low_44 (Length: 270)
Name: NF2747_low_44
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 17390708 - 17390448
Alignment:
| Q |
1 |
tatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacagattattcaatgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17390708 |
tatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacagattattcattgct |
17390609 |
T |
|
| Q |
101 |
agatccaaacttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcattgttgttcttcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17390608 |
agatccaaacttagcattcttataagtttcctcagtatttgaatcacgaatgatagtgtgaatctcacaatctccttttttatcattgttgttcttcaca |
17390509 |
T |
|
| Q |
201 |
taaattttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatccctttg |
261 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
17390508 |
taacttttgtaaacttgcactagtattcccttttgattttcatctcaatttcatccttttg |
17390448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 13706658 - 13706412
Alignment:
| Q |
9 |
catttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacagattattcaatgctagatccaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13706658 |
catttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaacaagaaaataagggtcgttaacagattattcattgctagatccaa |
13706559 |
T |
|
| Q |
109 |
acttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcattgttgttcttcacataaatttt |
208 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
13706558 |
acttagcattcttataagtttcctcactgtttgaatcacagatgttagtgtgaatctcacaatctcgttcttcatcattgttgttcttcacatccctttt |
13706459 |
T |
|
| Q |
209 |
gtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13706458 |
gtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
13706412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 13714149 - 13713903
Alignment:
| Q |
9 |
catttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacagattattcaatgctagatccaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13714149 |
catttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaacaagaaaataagggtcgttaacagattattcattgctagatccaa |
13714050 |
T |
|
| Q |
109 |
acttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcattgttgttcttcacataaatttt |
208 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
13714049 |
acttagcattcttataagtttcctcactgtttgaatcacagatgttagtgtgaatctcacaatctcgttcttcatcattgttgttcttcacatccctttt |
13713950 |
T |
|
| Q |
209 |
gtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713949 |
gtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
13713903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University