View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_53 (Length: 256)

Name: NF2747_low_53
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_53
NF2747_low_53
[»] chr3 (12 HSPs)
chr3 (1-168)||(26110836-26111005)
chr3 (7-171)||(26139782-26139948)
chr3 (1-168)||(26233182-26233351)
chr3 (4-171)||(26129137-26129306)
chr3 (1-148)||(26205119-26205268)
chr3 (3-171)||(26127838-26128002)
chr3 (3-171)||(26177888-26178052)
chr3 (4-171)||(26179193-26179362)
chr3 (46-171)||(26113370-26113497)
chr3 (45-123)||(26235691-26235771)
chr3 (45-119)||(26208950-26209026)
chr3 (89-168)||(26629192-26629271)
[»] chr2 (15 HSPs)
chr2 (193-240)||(10459031-10459078)
chr2 (186-241)||(10513930-10513985)
chr2 (191-240)||(10469073-10469122)
chr2 (194-238)||(10444877-10444921)
chr2 (193-240)||(10539303-10539350)
chr2 (191-241)||(7465944-7465994)
chr2 (186-240)||(10540780-10540834)
chr2 (203-240)||(7465176-7465213)
chr2 (187-240)||(10501717-10501770)
chr2 (186-238)||(10467944-10467996)
chr2 (188-235)||(10513051-10513098)
chr2 (192-237)||(10468247-10468292)
chr2 (186-234)||(10539595-10539643)
chr2 (186-226)||(10855505-10855545)
chr2 (191-235)||(10856117-10856161)
[»] chr1 (2 HSPs)
chr1 (186-240)||(24049989-24050043)
chr1 (186-240)||(24050285-24050339)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 26110836 - 26111005
Alignment:
Q  1 aaaacatgacaacactatttgtttgaaaagttggttacatactataaactcacctgtgaagatgttttacactc--aactaactaactggcctgatgatg 98  Q
    ||||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  26110836 aaaacatgacaacactacttgtttgaaaagtttgttacataagataaactcacctgtgaagatgttttacactcagaagtaactaactggcctgatgatg 26110935  T
Q  99 aacctactatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaac 168  Q
    ||||| ||| |||||| |||||||||||||||||| |||||| ||||||||| | | |||||||||||||    
T  26110936 aacctgctacatctaactgagttgacgatgttattttcttggcattagctgatgtatttccttcttcaac 26111005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 26139782 - 26139948
Alignment:
Q  7 tgacaacactatttgtttgaaaagttggttacatactataaactcacctgtgaagatgttttacactca--actaactaactggcctgatgatgaaccta 104  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||  | |||||||||||||||||||||||||||    
T  26139782 tgacaacactacttgtttgaaaagttggttacatacgataaactcaccagtgaagatattttacgctcagaagtaactaactggcctgatgatgaaccta 26139881  T
Q  105 ctatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaacatt 171  Q
     || |||||||||||||||||||| ||||||||||| |||| |||| | | ||||||||||||||||    
T  26139882 ttacatctaaatgagttgacgatgctattgtcttggcattaactgatgtatttccttcttcaacatt 26139948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 26233182 - 26233351
Alignment:
Q  1 aaaacatgacaacactatttgtttgaaaagttggttacatactataaactcacctgtgaagatgttttacactca--actaactaactggcctgatgatg 98  Q
    ||||||||| ||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||  | ||||||||||||| |||||||    
T  26233182 aaaacatgataacactacttgtttgaaaagtttgttacataagataaactcacctgtgaagatgttttacagtcagaagtaactaactggcccgatgatg 26233281  T
Q  99 aacctactatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaac 168  Q
    ||||| ||| |||||| |||||||||||||||||| |||||| ||||||||| | | |||||||||||||    
T  26233282 aacctgctacatctaactgagttgacgatgttattttcttggcattagctgatgtatttccttcttcaac 26233351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 26129137 - 26129306
Alignment:
Q  4 acatgacaacactatttgtttgaaaagttggttacatactataaactcacctgtgaagatgttttacactca--actaactaactggcctgatgatgaac 101  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||  | ||||||||||||||||||||||||    
T  26129137 acatgaaaacactacttgtttgaaaagttggttacatacgataaactcaccagtgaagatattttacgctcagaagtaactaactggcctgatgatgaac 26129236  T
Q  102 ctactatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaacatt 171  Q
    ||| || |||   |||||||||||||| ||||||||| | ||||||||| ||| ||||||||||||||||    
T  26129237 ctattacatcagtatgagttgacgatgctattgtcttagcattagctgatgcagttccttcttcaacatt 26129306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 26205119 - 26205268
Alignment:
Q  1 aaaacatgacaacactatttgtttgaaaagttggttacatactataaactcacctgtgaagatgttttacactc--aactaactaactggcctgatgatg 98  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||| |  || |||||||||||||||||||||    
T  26205119 aaaacatgacaacactacttgtttgaaaagttggttacataagataaactcacctgtgaagatgttttacacacagaagtaactaactggcctgatgatg 26205218  T
Q  99 aacctactatatctaaatgagttgacgatgttattgtcttggaattagct 148  Q
    || || ||| |||||| |||||||||||||||||| | |||| |||||||    
T  26205219 aatctgctacatctaactgagttgacgatgttattttattggcattagct 26205268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 26127838 - 26128002
Alignment:
Q  3 aacatgacaacactatttgtttgaaaagttggttacatacta---taaactcacctgtgaagatgttttacactcaactaactaactggcctgatgatga 99  Q
    ||||||||||||||| |||||||||||||||| |||||||||   | |||||||||||||||||||||| || ||       ||||||||||||||||||    
T  26127838 aacatgacaacactacttgtttgaaaagttggctacatactagtatgaactcacctgtgaagatgttttgcagtc-------taactggcctgatgatga 26127930  T
Q  100 acctactatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaacatt 171  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  26127931 acctgctacatctaaatgagttgacgatgttattgtcttggcattatctgatgcagttccttcttcaacatt 26128002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 26177888 - 26178052
Alignment:
Q  3 aacatgacaacactatttgtttgaaaagttggttacatacta---taaactcacctgtgaagatgttttacactcaactaactaactggcctgatgatga 99  Q
    ||||||||||||||| |||||||||||||||| |||||||||   | |||||||||||||||||||||| || ||       ||||||||||||||||||    
T  26177888 aacatgacaacactacttgtttgaaaagttggctacatactagtatgaactcacctgtgaagatgttttgcagtc-------taactggcctgatgatga 26177980  T
Q  100 acctactatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaacatt 171  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  26177981 acctgctacatctaaatgagttgacgatgttattgtcttggcattatctgatgcagttccttcttcaacatt 26178052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 26179193 - 26179362
Alignment:
Q  4 acatgacaacactatttgtttgaaaagttggttacatactataaactcacctgtgaagatgttttacactca--actaactaactggcctgatgatgaac 101  Q
    |||||| ||||||| ||||||||||||||||||| |||| ||||||||||| |||||||| |||||| ||||  | ||||||||||||||||||||||||    
T  26179193 acatgaaaacactacttgtttgaaaagttggttagatacgataaactcaccagtgaagatattttacgctcagaagtaactaactggcctgatgatgaac 26179292  T
Q  102 ctactatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaacatt 171  Q
    ||| || |||   |||||||||||||| ||||||||||| |||| |||| ||| ||||||||||||||||    
T  26179293 ctattacatcagtatgagttgacgatgctattgtcttggcattaactgatgcagttccttcttcaacatt 26179362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 26113370 - 26113497
Alignment:
Q  46 aaactcacctgtgaagatgttttacactca--actaactaactggcctgatgatgaacctactatatctaaatgagttgacgatgttattgtcttggaat 143  Q
    ||||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||| |||||| ||    
T  26113370 aaactcacctgtgaagatgttttacactcagaagtaactaactggcttgatgatgaacctactgcatcgaaatgagttgacgatgttattttcttggcat 26113469  T
Q  144 tagctgaggcacttccttcttcaacatt 171  Q
    | |||||   | ||||||||||| ||||    
T  26113470 tggctgatatatttccttcttcagcatt 26113497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 26235691 - 26235771
Alignment:
Q  45 taaactcacctgtgaagatgttttacactca--actaactaactggcctgatgatgaacctactatatctaaatgagttga 123  Q
    ||||||||| |||||||||||||||||||||  | |||||||||| ||||||||||||||| ||| |||||||||||||||    
T  26235691 taaactcacatgtgaagatgttttacactcagaagtaactaactgtcctgatgatgaacctgctacatctaaatgagttga 26235771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 26208950 - 26209026
Alignment:
Q  45 taaactcacctgtgaagatgttttacactca--actaactaactggcctgatgatgaacctactatatctaaatgag 119  Q
    ||||||||| |||||||||||||||||||||  | |||||||||| ||||||||||||||| ||| |||||||||||    
T  26208950 taaactcacatgtgaagatgttttacactcagaagtaactaactgtcctgatgatgaacctgctacatctaaatgag 26209026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 26629271 - 26629192
Alignment:
Q  89 cctgatgatgaacctactatatctaaatgagttgacgatgttattgtcttggaattagctgaggcacttccttcttcaac 168  Q
    |||||||||||||  ||||  ||||||||||||||| ||||||||| ||||| ||||||||| |   |||||||||||||    
T  26629271 cctgatgatgaactgactaattctaaatgagttgacaatgttattggcttggcattagctgatgtgtttccttcttcaac 26629192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 10459031 - 10459078
Alignment:
Q  193 agagacaggaaaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  10459031 agagacatgaaaatgatcttatgagtgcacaccactgcatattgtttt 10459078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 10513930 - 10513985
Alignment:
Q  186 tgaaggcagagacaggaaaatgatcttatgagtgctcaccactgcatattgttttt 241  Q
    |||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  10513930 tgaaagcagaaacaggaaaatgatcttatgactgcacaccactgcatattgttttt 10513985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 10469073 - 10469122
Alignment:
Q  191 gcagagacaggaaaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||||    
T  10469073 gcagagacatgaaaatgatcttatgagtacacaccactgcatattgtttt 10469122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 10444877 - 10444921
Alignment:
Q  194 gagacaggaaaatgatcttatgagtgctcaccactgcatattgtt 238  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  10444877 gagacatgaaaatgatcttatgagtgcacaccactgcatattgtt 10444921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 10539303 - 10539350
Alignment:
Q  193 agagacaggaaaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  10539303 agagacatgaaaatgatcttatgaatgcacaccactgcatattgtttt 10539350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 7465994 - 7465944
Alignment:
Q  191 gcagagacaggaaaatgatcttatgagtgctcaccactgcatattgttttt 241  Q
    ||||||||| |||||||||  ||||||||| ||||||||||||||||||||    
T  7465994 gcagagacatgaaaatgattgtatgagtgcacaccactgcatattgttttt 7465944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 10540780 - 10540834
Alignment:
Q  186 tgaaggcagagacaggaaaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    |||| ||||||||| |||||| ||||||| ||||| |||||||||||||||||||    
T  10540780 tgaaagcagagacatgaaaatcatcttataagtgcacaccactgcatattgtttt 10540834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 7465213 - 7465176
Alignment:
Q  203 aaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7465213 aaatgatcttatgagtgcgcaccactgcatattgtttt 7465176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 10501717 - 10501770
Alignment:
Q  187 gaaggcagagacaggaaaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    ||||||||||||| |||||||||||| ||||||| |||  ||||||||||||||    
T  10501717 gaaggcagagacatgaaaatgatcttgtgagtgcacacagctgcatattgtttt 10501770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 10467944 - 10467996
Alignment:
Q  186 tgaaggcagagacaggaaaatgatcttatgagtgctcaccactgcatattgtt 238  Q
    ||||||||| |||||||||||||||||| |||||| |||||| ||||| ||||    
T  10467944 tgaaggcagtgacaggaaaatgatcttaagagtgcacaccaccgcatagtgtt 10467996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 10513051 - 10513098
Alignment:
Q  188 aaggcagagacaggaaaatgatcttatgagtgctcaccactgcatatt 235  Q
    |||||||||||| ||| |||||||||||||||| ||| ||||||||||    
T  10513051 aaggcagagacatgaatatgatcttatgagtgcacacaactgcatatt 10513098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 10468247 - 10468292
Alignment:
Q  192 cagagacaggaaaatgatcttatgagtgctcaccactgcatattgt 237  Q
    |||||||| |||| | ||||||||||||| ||||||||||||||||    
T  10468247 cagagacatgaaagttatcttatgagtgcacaccactgcatattgt 10468292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 10539595 - 10539643
Alignment:
Q  186 tgaaggcagagacaggaaaatgatcttatgagtgctcaccactgcatat 234  Q
    |||| ||||||||| ||||||||||||  |||||| |||||||||||||    
T  10539595 tgaaagcagagacatgaaaatgatcttcagagtgcacaccactgcatat 10539643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 10855505 - 10855545
Alignment:
Q  186 tgaaggcagagacaggaaaatgatcttatgagtgctcacca 226  Q
    |||| ||||||||| |||||||||||||||||||| |||||    
T  10855505 tgaaagcagagacatgaaaatgatcttatgagtgcacacca 10855545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 10856117 - 10856161
Alignment:
Q  191 gcagagacaggaaaatgatcttatgagtgctcaccactgcatatt 235  Q
    ||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  10856117 gcagagacatgaaaatgatcttatgagtgcacaccattgcgtatt 10856161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 24050043 - 24049989
Alignment:
Q  186 tgaaggcagagacaggaaaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    |||| ||||||||| |||||| ||| ||||||||| |||||||||||||||||||    
T  24050043 tgaaagcagagacatgaaaattatcctatgagtgcacaccactgcatattgtttt 24049989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 24050339 - 24050285
Alignment:
Q  186 tgaaggcagagacaggaaaatgatcttatgagtgctcaccactgcatattgtttt 240  Q
    |||| ||||||| | | |||||||||||||||||| ||||||||||||| |||||    
T  24050339 tgaaagcagagaaatgtaaatgatcttatgagtgcacaccactgcatatagtttt 24050285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University