View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_57 (Length: 248)
Name: NF2747_low_57
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 46160148 - 46159912
Alignment:
| Q |
1 |
cacctttcctcacactatatccatccggcaacgtgtcatctgaaaaaacaatacttgctttcctatagacaaacaccataacatgaaattaattaagagg |
100 |
Q |
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| T |
46160148 |
cacctttcctcacactatatccatccggcaacgtgtcatctgaaaaa-caatacttgctttcctatagacaaacaccataacatgaaattaattaagagg |
46160050 |
T |
|
| Q |
101 |
ttcaattttttatctaactcttctaaagtgaacaacaaatgtaaagtgagtaacataaattgttgatgattaaattaaacactaatattcgttaacaact |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46160049 |
ttcaattttttat-taactcttctaaagtgaacaacaaatgtaaagtgagtaatataaattgttgatgattaaattaaacactaatattcgttaacaact |
46159951 |
T |
|
| Q |
201 |
agtaacaaatgattaaagaaaacgcagattgagaataat |
239 |
Q |
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|||||||||||||||||||||||||| ||||| |||||| |
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| T |
46159950 |
agtaacaaatgattaaagaaaacgcaaattgaaaataat |
46159912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46167010 - 46166787
Alignment:
| Q |
1 |
cacctttcctcacactatatccatccggcaacgtgtcatctgaaaaaacaatacttgctttcctatagacaaacaccataacatgaaattaattaagagg |
100 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
46167010 |
cacctttcgtaacactatatccatccggcaacgtgtcatctgaaaaa-caatacttgctttcctatagacaaacaccataacatgaaactagttaagagg |
46166912 |
T |
|
| Q |
101 |
ttcaatttttt-atctaactcttctaaagtgaacaacaaatgtaaagtgagtaacataaattgttgatgattaaattaaacactaatattcgttaacaac |
199 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
46166911 |
ttcaatttttttatctaactcttctaaagtgaacaacaaatgtaaagtgagtaatataaattgttgatgattaaattaaagactaatattctttaacaac |
46166812 |
T |
|
| Q |
200 |
tagtaacaaatgattaaagaaaacg |
224 |
Q |
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|||||||| | |||| ||||||||| |
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| T |
46166811 |
tagtaacagaagattcaagaaaacg |
46166787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 5948842 - 5948874
Alignment:
| Q |
191 |
gttaacaactagtaacaaatgattaaagaaaac |
223 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
5948842 |
gttaataactagtaacaaatgattaaagaaaac |
5948874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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