View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_6 (Length: 601)

Name: NF2747_low_6
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_6
NF2747_low_6
[»] chr1 (1 HSPs)
chr1 (36-583)||(36314145-36314695)
[»] chr8 (27 HSPs)
chr8 (138-583)||(19503674-19504101)
chr8 (140-451)||(19355714-19356022)
chr8 (154-469)||(19376801-19377113)
chr8 (154-583)||(19345242-19345653)
chr8 (186-475)||(19404923-19405209)
chr8 (140-464)||(19337681-19337996)
chr8 (189-583)||(19410853-19411229)
chr8 (189-475)||(19555171-19555454)
chr8 (191-463)||(19592308-19592574)
chr8 (191-463)||(19540124-19540390)
chr8 (204-463)||(19469213-19469466)
chr8 (349-583)||(19457872-19458091)
chr8 (349-583)||(19522987-19523206)
chr8 (189-311)||(19390951-19391073)
chr8 (352-475)||(19468410-19468533)
chr8 (378-583)||(19390656-19390864)
chr8 (378-460)||(19172660-19172742)
chr8 (365-463)||(19287901-19287999)
chr8 (186-311)||(19172474-19172599)
chr8 (527-583)||(19337526-19337582)
chr8 (138-265)||(19450666-19450793)
chr8 (138-265)||(19530283-19530410)
chr8 (527-583)||(19355546-19355602)
chr8 (394-441)||(19371145-19371192)
chr8 (536-583)||(19469524-19469571)
chr8 (536-583)||(19540448-19540495)
chr8 (536-583)||(19592203-19592250)
[»] chr6 (1 HSPs)
chr6 (379-475)||(19543241-19543337)


Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 36 - 583
Target Start/End: Original strand, 36314145 - 36314695
Alignment:
Q  36 ttgtatctaatagtatgaaggaaggctatgtctacggtgaaataagcagtaaataatcactttgaacctatctaattaaaatgatattataacttacgta 135  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314145 ttgtatctaatggtatgaaggaaggctatgtctacggtgaaataagcagtaaataatcactttgaacctatctaattaaaatgatattataacttacgta 36314244  T
Q  136 gagctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314245 gagctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaa 36314344  T
Q  236 attatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314345 attatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgat 36314444  T
Q  336 gcattgtccattttgc---ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccat 432  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314445 gcattgtccattttgctttttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccat 36314544  T
Q  433 tgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcg 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  36314545 tgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccacttgttaacttgcccttcgaggatagctcccatca 36314644  T
Q  533 tataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314645 tataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 36314695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 138 - 583
Target Start/End: Original strand, 19503674 - 19504101
Alignment:
Q  138 gctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaat 237  Q
    ||||||||||| |   ||||||||||||  ||||||  ||||||  | ||||||||||||||||||||||||||||||||||||| ||||||||||  ||    
T  19503674 gctgattttgtagagtttaccaagacgtagaagttattctgactcaccaaatcaacatcttgtgtcgaattccatgaatagaatatacatccagtcccat 19503773  T
Q  238 tatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgatgc 337  Q
    || |||| |||||   ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| | |||| |  |||| | | || |||    
T  19503774 taccataaaattcctggaatccattgcaattacaatttctccaacatctaatcttgcaatcactgtaactataagtcacatcctgttcaaacgttgttgc 19503873  T
Q  338 attgtccattttgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgcta 437  Q
    ||||||   |  | ||||||||||| |  ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19503874 attgtc---tacgtttggtgttcccgcaattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgcta 19503970  T
Q  438 ttatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataa 537  Q
    |||||||||||||| ||||||||||| ||||| ||||||            |||| |||   |  |||| | |||||||||| ||| | |||||||  ||    
T  19503971 ttatatccataacacatatctgcattcccaatctctcca------------tcatgacc---tactaacctccccttcgaggttagttgccatcgtgcaa 19504055  T
Q  538 acttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  19504056 acttcccatctttaacttcgaaagcgaaagaatcttcattcttgtt 19504101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 140 - 451
Target Start/End: Complemental strand, 19356022 - 19355714
Alignment:
Q  140 tgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaatta 239  Q
    ||||||||||||| |||||||| ||| |||||||  ||   |||| |||||||| |||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  19356022 tgattttgttggctttaccaaggcgtaaaagttattctttttgtccaaatcaacgtcttgtgttgaattccatgaatagtatatacatccagtaaaatta 19355923  T
Q  240 tcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgatgcat 339  Q
       |||||||||  |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||  | ||||   | || |||||    
T  19355922 atgtataattcttggaatccatagcaattacaatttctccaacatctcatcttgcaatcactataaccataattcacatcaccttcagtagttgttgcat 19355823  T
Q  340 tgtccattttgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctatt 439  Q
    ||||   |||  ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  19355822 tgtc---tttatttggtcttcccacctttttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctatt 19355726  T
Q  440 atatccataaca 451  Q
    ||||||||||||    
T  19355725 atatccataaca 19355714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 154 - 469
Target Start/End: Complemental strand, 19377113 - 19376801
Alignment:
Q  154 ttaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctac 253  Q
    |||||||| ||| ||||||| |||||||  | ||||||| ||||||||||||||||||||||||||||| ||||||||||  |||   ||| ||||||      
T  19377113 ttaccaaggcgtaaaagttatcctgactcaccaaatcaagatcttgtgtcgaattccatgaatagaatatacatccagtcccattgcgataaaattcttg 19377014  T
Q  254 gaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgatgcattgtccattttgctt 353  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| | |||| |  ||||   | ||||||||||||   | || ||    
T  19377013 gaatccattgcaattacaatttctccaacatcttatcttgcaatcactgtaaacataagtcacatcctgttcaatggttgatgcattgtc---tatgttt 19376917  T
Q  354 ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacata 453  Q
    ||| ||||   |||| | ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  19376916 ggtcttccagtctttctttgaaacacctcaccaggttccctgcaagctggtatatcctcccatttttggcaccctcgatcactattatatccataacata 19376817  T
Q  454 tatctgcatttccaat 469  Q
    ||||||||||||||||    
T  19376816 tatctgcatttccaat 19376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 154 - 583
Target Start/End: Complemental strand, 19345653 - 19345242
Alignment:
Q  154 ttaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctac 253  Q
    ||||||||||||  ||||||  ||||||  | |||||||||| |||||| ||||||||||||||||||  ||||||||||  |||| |||| |||||       
T  19345653 ttaccaagacgtagaagttattctgactcaccaaatcaacatattgtgttgaattccatgaatagaatgtacatccagtcccattaccataaaattcctg 19345554  T
Q  254 gaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgatgcattgtccattttgctt 353  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||||||| |||| | ||||   ||||| |   || | ||| ||| |    | ||    
T  19345553 gaatccattgcaataacaatttctccaacatctaatcttgcaatcactgtaactataagtcacatcgaattcaaacactgtttcatagtctaa---ggtt 19345457  T
Q  354 ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacata 453  Q
    |||||||||||| ||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  19345456 ggtgttcccaccattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataacaca 19345357  T
Q  454 tatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaac 553  Q
    |||||||||| ||||| ||||||            |||| |||   |  |||| | || ||||||| ||| | |||||||  ||||||||||||||||||    
T  19345356 tatctgcattcccaatatctcca------------tcatgacc---tactaacctcccgttcgaggttagttgccatcgtgcaaacttcccatctttaac 19345272  T
Q  554 ttcaaaagcgaaagaatcttcattcttgtt 583  Q
    ||| ||||||||||||||||||||||||||    
T  19345271 ttcgaaagcgaaagaatcttcattcttgtt 19345242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 186 - 475
Target Start/End: Complemental strand, 19405209 - 19404923
Alignment:
Q  186 aaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatc 285  Q
    ||||| || |||||||||||||||||||||||| ||| ||||||||| ||||||   |||| |||| ||||||||| |||| ||||||||||||||||||    
T  19405209 aaatccacgtcttgtgtcgaattccatgaatagtatatacatccagtaaaattactgtatagttcttcgaatccatagcaattacaatttctccaacatc 19405110  T
Q  286 tcatcttgcaatcactgtaaccataaattacattccattcatatgatgatgcattgtccattttgcttggtgttcccacctttttctgaaaaacctcacc 385  Q
    |||||||||||||||||||||||||| | ||||  | ||||   | ||||||||||   ||  || ||||| |||||  |||  ||||||| ||||||||    
T  19405109 tcatcttgcaatcactgtaaccataattcacatcaccttcagtagttgatgcattg---atgatgtttggtcttcccgtcttcctctgaaacacctcacc 19405013  T
Q  386 aggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 475  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| ||||||||||||||||| |||||    
T  19405012 aggttccctacaagttggtatatcctcccacttttggcaccctccgtccctattatatccataacacatatctgcatttccaatatctcc 19404923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 140 - 464
Target Start/End: Complemental strand, 19337996 - 19337681
Alignment:
Q  140 tgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaatta 239  Q
    ||||||||||||| |||||||| ||| |||||||  ||   |||| |||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||    
T  19337996 tgattttgttggctttaccaaggcgtaaaagttattctttttgtccaaatcaacgtcttgtgtcgaattccatgaatagtatatacatccagtaaaatta 19337897  T
Q  240 tcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgtaaccataaattacattccattcatatgatgatgcat 339  Q
       ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||   |  ||     ||||| || || |||||    
T  19337896 ctgtataattcttcgaatccatagcaattacaatttctccaacatctcatcttgcaatcatcgtaaccat---tagca---ggttcatctgttgttgcat 19337803  T
Q  340 tgtccattttgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctatt 439  Q
    ||||   |||  ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  19337802 tgtc---tttatttggtcttcccaccattttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctatt 19337706  T
Q  440 atatccataacatatatctgcattt 464  Q
    |||||||||||| || |||||||||    
T  19337705 atatccataacacatgtctgcattt 19337681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 189 - 583
Target Start/End: Complemental strand, 19411229 - 19410853
Alignment:
Q  189 tcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctca 288  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||| ||||  |||  ||  |  |||||||||||||||||||||| |||||||||| |    
T  19411229 tcaacatattgtgtcgaattccatgaaaggaatacacatccagtcatattactataatatagttggaatccattgcaactacaatttttccaacatctga 19411130  T
Q  289 tcttgcaatcactgtaaccataaattacattccattcatatgatgatgcattgtccattttgcttggtgttcccacctttttctgaaaaacctcaccagg 388  Q
    |||||||||||||||||| |||| | || |   ||||||||| || || |||||| ||   ||||||| ||||| ||||||||||||| | |||||||||    
T  19411129 tcttgcaatcactgtaactataagtcacgtcgaattcatatgttgttgaattgtctat---gcttggtcttcccgcctttttctgaaacatctcaccagg 19411033  T
Q  389 ttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtct 488  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||  |||| | ||||                
T  19411032 ttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgtaacacatatctgcattagcaatatatcca------------ 19410945  T
Q  489 tcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    ||||||||   |  |||||| |||||||||||||| |||||| ||  ||||||||||||||||||||| || | |||||||||||||| ||||||    
T  19410944 tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgtt 19410853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 189 - 475
Target Start/End: Original strand, 19555171 - 19555454
Alignment:
Q  189 tcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctca 288  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||| ||||  |||  ||  |  |||||||||||||||||||||| |||||||| |||    
T  19555171 tcaacatattgtgtcgaattccatgaaaggaatacacatccagtcatattactataatatagttggaatccattgcaactacaatttttccaacatttca 19555270  T
Q  289 tcttgcaatcactgtaaccataaattacattccattcatatgatgatgcattgtccattttgcttggtgttcccacctttttctgaaaaacctcaccagg 388  Q
    |||||||||||||||||| |||| | ||||   ||||||| | || || |||||| || ||   |||| ||||| |||||||||||||  ||||||||||    
T  19555271 tcttgcaatcactgtaactataagtcacatcgaattcatacgttgttgaattgtctatgtt---tggtcttcccgcctttttctgaaacccctcaccagg 19555367  T
Q  389 ttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 475  Q
    | |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||||| |||| |||||    
T  19555368 tgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataacacatatctgcatttacaatatctcc 19555454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 191 - 463
Target Start/End: Complemental strand, 19592574 - 19592308
Alignment:
Q  191 aacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctcatc 290  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  |||||||||  |||||  |||| || ||||| ||||||||||||||||||| |||    
T  19592574 aacatattgtgtcgaattccatgaatggaatacacatccagtcccattatcataatattcttggaatgcactgcaattacaatttctccaacatctaatc 19592475  T
Q  291 ttgcaatcactgtaaccataaattacattccattcatatgatgatgcattgtccattttgcttggtgttcccacctttttctgaaaaacctcaccaggtt 390  Q
    |||||||||||||||| |||| | |||| |  |||| | | || ||||||||| |  ||   |||||||||| |||||||||||||||||||||||||||    
T  19592474 ttgcaatcactgtaactataagtcacatcctgttcaaacgttgttgcattgtctacgtt---tggtgttcccgcctttttctgaaaaacctcaccaggtt 19592378  T
Q  391 ccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 463  Q
    |||| ||||||||||||||||||||||||||||| |||||||    | ||||||| ||||| |||||||||||    
T  19592377 ccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgtaacacatatctgcatt 19592308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 191 - 463
Target Start/End: Original strand, 19540124 - 19540390
Alignment:
Q  191 aacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctcatc 290  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  |||||||||  |||||  |||| || ||||| |||||||| ||||||||||||||    
T  19540124 aacatattgtgtcgaattccatgaatggaatacacatccagtcccattatcataatattcttggaatgcactgcaattacaatttttccaacatctcatc 19540223  T
Q  291 ttgcaatcactgtaaccataaattacattccattcatatgatgatgcattgtccattttgcttggtgttcccacctttttctgaaaaacctcaccaggtt 390  Q
    |||||||||||||||| |||| | |||| |  |||| | | || || |||||| |   |||||||| ||||| ||||||||||||| |||||||||||||    
T  19540224 ttgcaatcactgtaactataagtcacatcctcttcaaacgttgttgaattgtcaa---tgcttggtcttcccgcctttttctgaaacacctcaccaggtt 19540320  T
Q  391 ccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 463  Q
    |||| ||||||||||||||||||||||||||||| |||||||    | ||||||| ||||| |||||||||||    
T  19540321 ccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgtaacacatatctgcatt 19540390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 204 - 463
Target Start/End: Original strand, 19469213 - 19469466
Alignment:
Q  204 gaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctcatcttgcaatcactgt 303  Q
    ||||||||||||| ||||||||||||||||  |||||||||  |||||  |||| || ||||| |||||||| |||||||||||||||||||||||||||    
T  19469213 gaattccatgaatggaatacacatccagtcccattatcataatattcttggaatgcactgcaattacaatttttccaacatctcatcttgcaatcactgt 19469312  T
Q  304 aaccataaattacattccattcatatgatgatgcattgtccattttgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttgg 403  Q
    ||| |||| | |||| |  |||| | | || || |||||| ||   ||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  19469313 aactataagtcacatcctcttcaaacgttgttgaattgtcaat---gcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttgg 19469409  T
Q  404 tatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 463  Q
    ||||||||||||||||||||| |||||||    | ||||||| ||||| |||||||||||    
T  19469410 tatatcctcccatttttggcatcctccat---cactatatccgtaacacatatctgcatt 19469466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 349 - 583
Target Start/End: Complemental strand, 19458091 - 19457872
Alignment:
Q  349 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 448  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19458091 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19457992  T
Q  449 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 548  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19457991 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19457907  T
Q  549 ttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    |||||||| || | |||||||||||||| ||||||    
T  19457906 ttaacttcgaacgtgaaagaatcttcatccttgtt 19457872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 349 - 583
Target Start/End: Original strand, 19522987 - 19523206
Alignment:
Q  349 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 448  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19522987 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19523086  T
Q  449 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 548  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19523087 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19523171  T
Q  549 ttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    |||||||| || | |||||||||||||| ||||||    
T  19523172 ttaacttcgaacgtgaaagaatcttcatccttgtt 19523206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 19391073 - 19390951
Alignment:
Q  189 tcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatctca 288  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||  ||||||||| ||||||  |||||||||||||||||||||| ||||||||||||    
T  19391073 tcaacatattgcgtcgaattccatgaatagaatatacatccagtcccattatcatacaattcttggaatccattgcaactacaatttttccaacatctca 19390974  T
Q  289 tcttgcaatcactgtaaccataa 311  Q
    |||||||||||||||||| ||||    
T  19390973 tcttgcaatcactgtaactataa 19390951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 352 - 475
Target Start/End: Original strand, 19468410 - 19468533
Alignment:
Q  352 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 451  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19468410 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19468509  T
Q  452 tatatctgcatttccaatttctcc 475  Q
     |||||||||||| |||| |||||    
T  19468510 catatctgcatttacaatatctcc 19468533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 378 - 583
Target Start/End: Complemental strand, 19390864 - 19390656
Alignment:
Q  378 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccac 477  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||  ||||||||||  |||| ||| |||    
T  19390864 acctcacgagggtccctgcaagttggtatatcctcccatttttggcacccggcatcactattatatccataacacttatctgcattagcaatgtctgcac 19390765  T
Q  478 tagcattgtct---tcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttc 574  Q
    ||  | | |||   |||||| ||||| ||||| | ||||||||||  |    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19390764 tataaatctctccctcatcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttc 19390665  T
Q  575 attcttgtt 583  Q
    || ||||||    
T  19390664 atccttgtt 19390656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 460
Target Start/End: Original strand, 19172660 - 19172742
Alignment:
Q  378 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgc 460  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  19172660 acctcaccgggttccctgcaggttggtatatcctcccatttttggcaccctccatcggtattatagccataacacatatctgc 19172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 365 - 463
Target Start/End: Complemental strand, 19287999 - 19287901
Alignment:
Q  365 ctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 463  Q
    |||||| ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||    
T  19287999 ctttttttgaaagacctcaccacgttccctgcaagttggcatatcctcccatttttggcacccttcatcattattatatccataacacttatctgcatt 19287901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 186 - 311
Target Start/End: Original strand, 19172474 - 19172599
Alignment:
Q  186 aaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaattatcatataattctacgaatccattgcaactacaatttctccaacatc 285  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||  ||||  ||| ||||||  ||| ||||||||   ||| ||||||||||| |    
T  19172474 aaatcaacatcttgtgtcgaattcgatgaataaaatatacatccagtcccattacgataaaattcttggaacccattgcattcacagtttctccaacaac 19172573  T
Q  286 tcatcttgcaatcactgtaaccataa 311  Q
    | ||||| ||||||||||||||||||    
T  19172574 tgatcttacaatcactgtaaccataa 19172599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 19337582 - 19337526
Alignment:
Q  527 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  19337582 ccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgtt 19337526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 19450793 - 19450666
Alignment:
Q  138 gctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaat 237  Q
    |||| |||||||||| |||||||| ||| ||| |||   ||| | || ||||| || |||| ||||||||||||||||||||||| ||||||||||  ||    
T  19450793 gctgtttttgttggctttaccaaggcgtaaaaattatattgattctccaaatccacttcttttgtcgaattccatgaatagaatatacatccagtcccat 19450694  T
Q  238 tatcatataattctacgaatccattgca 265  Q
    ||  | ||||||||  ||||||||||||    
T  19450693 tactaaataattcttggaatccattgca 19450666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 19530283 - 19530410
Alignment:
Q  138 gctgattttgttggcattaccaagacgttaaagttaccctgactgtctaaatcaacatcttgtgtcgaattccatgaatagaatacacatccagtcaaat 237  Q
    |||| |||||||||| |||||||| ||| ||| |||   ||| | || ||||| || |||| ||||||||||||||||||||||| ||||||||||  ||    
T  19530283 gctgtttttgttggctttaccaaggcgtaaaaattatattgattctccaaatccacttcttttgtcgaattccatgaatagaatatacatccagtcccat 19530382  T
Q  238 tatcatataattctacgaatccattgca 265  Q
    ||  | ||||||||  ||||||||||||    
T  19530383 tactaaataattcttggaatccattgca 19530410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 19355602 - 19355546
Alignment:
Q  527 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||    
T  19355602 ccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgtt 19355546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 19371192 - 19371145
Alignment:
Q  394 tacaagttggtatatcctcccatttttggcaccctccattgctattat 441  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  19371192 tacaagttggtatatactcccatttttggcatccaccattactattat 19371145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 583
Target Start/End: Original strand, 19469524 - 19469571
Alignment:
Q  536 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||    
T  19469524 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgtt 19469571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 583
Target Start/End: Original strand, 19540448 - 19540495
Alignment:
Q  536 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||    
T  19540448 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgtt 19540495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 583
Target Start/End: Complemental strand, 19592250 - 19592203
Alignment:
Q  536 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgtt 583  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||    
T  19592250 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgtt 19592203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 379 - 475
Target Start/End: Complemental strand, 19543337 - 19543241
Alignment:
Q  379 cctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 475  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||| |||||    
T  19543337 cctcaccaggttccctacaacttggtatatcctcccatttttggcaccctccgttgatattatatccataacacaagtctgcatttccaatatctcc 19543241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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