View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_low_65 (Length: 235)

Name: NF2747_low_65
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_low_65
NF2747_low_65
[»] chr8 (2 HSPs)
chr8 (24-226)||(44688805-44689002)
chr8 (30-79)||(13170800-13170849)
[»] chr3 (11 HSPs)
chr3 (30-215)||(41985533-41985713)
chr3 (102-214)||(9425545-9425657)
chr3 (110-215)||(41980834-41980939)
chr3 (108-212)||(9407344-9407448)
chr3 (130-211)||(9343845-9343926)
chr3 (130-215)||(9448314-9448399)
chr3 (102-197)||(9494857-9494952)
chr3 (103-180)||(9329809-9329886)
chr3 (102-215)||(9617494-9617607)
chr3 (108-214)||(9397763-9397869)
chr3 (103-180)||(9336513-9336590)
[»] chr2 (1 HSPs)
chr2 (102-180)||(20694367-20694445)
[»] chr1 (3 HSPs)
chr1 (108-193)||(18991182-18991267)
chr1 (102-180)||(4439832-4439910)
chr1 (102-214)||(4428603-4428715)
[»] chr7 (1 HSPs)
chr7 (102-197)||(3695662-3695757)
[»] chr6 (1 HSPs)
chr6 (108-211)||(7046817-7046920)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 44689002 - 44688805
Alignment:
Q  24 tctgtgttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagttgaaggatttgattcacaagtgaagattacacaattccctttgg 123  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  44689002 tctgcgttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagttgaaggatt-----cacaagtgaagattacacaattccctttgg 44688908  T
Q  124 caatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcctatgctt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44688907 caatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgctt 44688808  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 13170849 - 13170800
Alignment:
Q  30 ttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagt 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  13170849 ttgatccaagtgaaaaacacacatcccacaaagcatctcgtcaacatagt 13170800  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 41985533 - 41985713
Alignment:
Q  30 ttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagttgaaggatttgattcacaagtgaagattacacaattccctttggcaatag 129  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| || |||     ||  |||  | | ||||| |||||||| |||||| ||| ||    
T  41985533 ttgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgtagaa-----tgcatcatcactaaagatgacacaatttcctttgacaacag 41985627  T
Q  130 acaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttc 215  Q
    ||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  ||||| |||||||||    
T  41985628 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttc 41985713  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 9425545 - 9425657
Alignment:
Q  102 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 201  Q
    ||||| ||||||||||||||||||| | ||||||||||||| | || |||||||||| || ||||| | ||||||||||  ||||||| ||||||| | |    
T  9425545 aagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatca 9425644  T
Q  202 actttacccattt 214  Q
    |||| ||||||||    
T  9425645 acttcacccattt 9425657  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 41980834 - 41980939
Alignment:
Q  110 acaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacc 209  Q
    |||||| |||||| ||| ||||||||  ||||||| || | |||| ||| || |||||||||||||||||| ||||| |||||||||||| ||||| |||    
T  41980834 acaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacc 41980933  T
Q  210 catttc 215  Q
    ||||||    
T  41980934 catttc 41980939  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 9407344 - 9407448
Alignment:
Q  108 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 207  Q
    ||||||||||||||||||| | ||||||||||||| | || |||||||||| || ||||| | ||||||||||  |||| |||||||||| | ||||| |    
T  9407344 acacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttca 9407443  T
Q  208 cccat 212  Q
    |||||    
T  9407444 cccat 9407448  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 9343845 - 9343926
Alignment:
Q  130 acaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttaccca 211  Q
    ||||||||||||||| || |||||| ||| |||||||||||||||||||||  |||| ||||||| | |||||||| |||||    
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcaccca 9343926  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 9448314 - 9448399
Alignment:
Q  130 acaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttc 215  Q
    ||||||||||||||| || |||||| ||| | |||||||||||||||||||  |||| ||||||| | |||||||| |||||||||    
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttc 9448399  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 9494952 - 9494857
Alignment:
Q  102 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactc 197  Q
    ||||| |||||||||||||||| ||   ||||||| ||||||| || |||||| ||| || ||||||||||||||||||  |||| ||||||||||    
T  9494952 aagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactc 9494857  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 9329809 - 9329886
Alignment:
Q  103 agattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaa 180  Q
    |||| ||||||||||| ||||||| |  ||| || ||||||| || |||||| |||||| ||||||||||||||||||    
T  9329809 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaa 9329886  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 9617607 - 9617494
Alignment:
Q  102 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 201  Q
    ||||| |||||||||||||||| || | ||||||| ||||||| || |||||||||| || ||||| | | ||||||||  |||| ||||||| |  | |    
T  9617607 aagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttca 9617508  T
Q  202 actttacccatttc 215  Q
    |||| |||||||||    
T  9617507 acttcacccatttc 9617494  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 9397763 - 9397869
Alignment:
Q  108 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 207  Q
    ||||||||||||||||||| | |||||||| |||| | ||  ||||||||| || ||||| | |||||||| |  |||| |||||||||| | ||||| |    
T  9397763 acacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttca 9397862  T
Q  208 cccattt 214  Q
    | |||||    
T  9397863 cgcattt 9397869  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 9336513 - 9336590
Alignment:
Q  103 agattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaa 180  Q
    |||| ||||||||||| ||||||| |  ||| || ||||||| || |||||| ||| || ||||||||||||||||||    
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaa 9336590  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 20694445 - 20694367
Alignment:
Q  102 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaa 180  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| || |||||| ||| || |||||||||| |||||||    
T  20694445 aagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaa 20694367  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 18991182 - 18991267
Alignment:
Q  108 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaa 193  Q
    ||||||||||||||| ||| ||| ||||| ||||||| || |||||| ||| || ||||||||||||||||||  |||||||||||    
T  18991182 acacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaa 18991267  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 4439832 - 4439910
Alignment:
Q  102 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaa 180  Q
    ||||| |||||||||||||| | || | ||||||||||||||| || |||||| ||| || |||||||||| |||||||    
T  4439832 aagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaa 4439910  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 4428603 - 4428715
Alignment:
Q  102 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 201  Q
    ||||| |||||||||||||| | || |||||| || |||||||  | ||||||  || || |||||||||| |||||||  |||| ||| |||||||| |    
T  4428603 aagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtca 4428702  T
Q  202 actttacccattt 214  Q
    | || ||||||||    
T  4428703 atttcacccattt 4428715  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 3695662 - 3695757
Alignment:
Q  102 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactc 197  Q
    ||||| ||||||||||||||||||  |||||||||||||||| ||| |||||||||| ||    | || |||||||||| ||||| ||||||||||    
T  3695662 aagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactc 3695757  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 7046817 - 7046920
Alignment:
Q  108 acacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaacttta 207  Q
    ||||||||||||||||||| | ||||||| |||  || || |||||| ||| |||   ||||||||||||||| | ||| |||||||||||||||||| |    
T  7046817 acacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttca 7046916  T
Q  208 ccca 211  Q
    ||||    
T  7046917 ccca 7046920  T

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