View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_71 (Length: 207)
Name: NF2747_low_71
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 47057339 - 47057166
Alignment:
| Q |
19 |
gatagccatttttgttatatgagagaaagatttcaacctcaaaacaccgtttgtgtttgtttgattcttttcggaaacccaaatggctatttaacattga |
118 |
Q |
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| T |
47057339 |
gatagccatttttgttatatgagagaaagatttcaatctcaaaacactgtttgtgtttgtttgattcttttcggaaacctaaatggctatttaacattga |
47057240 |
T |
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| Q |
119 |
gatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttg |
192 |
Q |
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| T |
47057239 |
gatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttg |
47057166 |
T |
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 26970383 - 26970298
Alignment:
| Q |
106 |
tatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttg |
192 |
Q |
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| T |
26970383 |
tatttaacgttgagctcaagaaatatataaggtaagaaaataaatggggacgcatcaatgagaacgagaac-ggaaagaaacctttg |
26970298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 26920796 - 26920711
Alignment:
| Q |
94 |
aacccaaa-tggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacag |
178 |
Q |
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| T |
26920796 |
aacccaaagtgggtatttaacgttgagctcaagaaatatataaggtaagcaaataaatggggacgcgtcaatgagaacgagaacag |
26920711 |
T |
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