View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_low_8 (Length: 538)
Name: NF2747_low_8
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 33 - 520
Target Start/End: Complemental strand, 19750949 - 19750461
Alignment:
| Q |
33 |
gcataaaaagctaataagatatgcagaagtcccatatctacacagttgatctctctcattc-aatgtgatttgctttattcatgtgtcctctgcctagaa |
131 |
Q |
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| T |
19750949 |
gcataaaaagctaataagatatgcagaagtcccatatctacacagttgatctctctcattccaatgtgatttgctttattcatgtgtcctctgcctagaa |
19750850 |
T |
|
| Q |
132 |
acatgccaggagccactgtttgcatgtgtcacattcatcgacgattattcaccacccatgtcggcctcaggtgtcataatatgccatattgaagaaataa |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
19750849 |
acatgccaggagccactgtttgcatgtgtcacattcatcgacgatcattcaccacccatgtcggcctcaggtgtcacaatatgccatattgaagaaatta |
19750750 |
T |
|
| Q |
232 |
aagacatacaagtatcctaagaatagataaattctttgagtcttggtaannnnnnnnaattttaactctcactaaatcatgcattgacaaatcagagtta |
331 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19750749 |
aagacatacaagtatcctaagaatagataaattcttagagtcttggtaattttttttaattttaactctcactaaatcgtgcattgacaaatcagagtta |
19750650 |
T |
|
| Q |
332 |
ttttctaagtttgttgtcatagtgaaattcatagaggtgacacaatgcacgaacacacactatagtgtaaatttgttttcataccaacagttgatatagg |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19750649 |
ttttctaagtttgttgtcatagtgaaattcatagaggtgacacaatgcacgaacacacactaaagtgtaaatttgttttcataccaacagttgatatagg |
19750550 |
T |
|
| Q |
432 |
caccactcaatcactcattaacacacataacaaaaggtagagatcagatcatcgaatgctttgtcaatacaaattctgaatcattaatt |
520 |
Q |
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| T |
19750549 |
caccactcaatcactcattaacacacataacaaaaggtagagatcagatcatggaatgctttgtcaatacaaattatgaatcattaatt |
19750461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 19596446 - 19596488
Alignment:
| Q |
34 |
cataaaaagctaataagatatgcagaagtcccatatctacaca |
76 |
Q |
| |
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|||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
19596446 |
cataaaaaactaataacatatgtagaagtcccatatctacaca |
19596488 |
T |
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