View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_103 (Length: 227)
Name: NF2748_high_103
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52712677 - 52712897
Alignment:
| Q |
1 |
gctcttccccaagctatcgttccctttgtgtttgccaaagaatacaatatccatccaaacatactcggtactgggtaagtctcattttttgttctgtttt |
100 |
Q |
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| T |
52712677 |
gctcttccccaagctatcgttccctttgtgtttgccaaagaatacaatatccatccaaacatactcggtactgggtaagtctcattttttgttctgtttt |
52712776 |
T |
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| Q |
101 |
catttccatctctgttaaaagaaaatgcaaatgattatgaaaacttatcgaaattctaaaagagaatttggtatttgtgctgcagggttatatttggaat |
200 |
Q |
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| T |
52712777 |
catttccatctctgttaaaagaaaatgcaaatgattatgaaaacttatcgaaattctaaaagagaatttggtatttgtgctgcagggttatatttggaat |
52712876 |
T |
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| Q |
201 |
gttgattgcattgccaataac |
221 |
Q |
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| T |
52712877 |
gttgattgcattgccaataac |
52712897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 52718340 - 52718560
Alignment:
| Q |
4 |
cttccccaagctatcgttccctttgtgtttgccaaagaatacaatatccatccaaacatactcggtactgggtaagtctcattttttgttctgttttcat |
103 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||| ||||||||||||| || ||| |
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| T |
52718340 |
cttccccaaggtattgttccctttgtgtttgccaaagaatacaatctccatccaaatatactcagtactgggtgagtctcatttttt-ttaattttattg |
52718438 |
T |
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| Q |
104 |
ttccatctctgttaaaagaaaatgcaaatgat----tatgaaaacttatcgaaattctaaaagagaatttggtatttgtgctgcagggttatatttggaa |
199 |
Q |
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| T |
52718439 |
ttacatctttgttaaaagaaattgcaagtgattaagtatgtggatttattgaaatactaaaacagaatttggtatttgtgctgcagggttatatttggaa |
52718538 |
T |
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| Q |
200 |
tgttgattgcattgccaataac |
221 |
Q |
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| T |
52718539 |
tgttgattgcattgcccataac |
52718560 |
T |
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