View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_high_11 (Length: 585)

Name: NF2748_high_11
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_high_11
NF2748_high_11
[»] chr3 (3 HSPs)
chr3 (5-297)||(11432940-11433232)
chr3 (374-448)||(11432820-11432894)
chr3 (509-564)||(11432704-11432759)
[»] chr8 (3 HSPs)
chr8 (26-318)||(40040488-40040776)
chr8 (376-448)||(40040021-40040093)
chr8 (509-558)||(40039909-40039960)
[»] chr6 (1 HSPs)
chr6 (510-555)||(24473851-24473896)
[»] chr7 (2 HSPs)
chr7 (510-554)||(42150020-42150064)
chr7 (405-445)||(47524478-47524518)
[»] chr2 (1 HSPs)
chr2 (510-553)||(40606089-40606132)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 297
Target Start/End: Complemental strand, 11433232 - 11432940
Alignment:
Q  5 atgaaggagcataaaacactaactactgcacccttctcattattggacccaccagttaagaataattttaaacaagatatgcataagttaagaataaagg 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11433232 atgaaggagcataaaacactaactactgcacccttctcactattggacccaccagttaagaataattttaaacaagatatgcataagttaagaataaagg 11433133  T
Q  105 ctagctatgatcttatagattacagaagttggannnnnnnaattggagttattgaaaatattacacaccggaatagtttcacatcacgtttccggtttgg 204  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11433132 ctagctatgatcttatagattacagaagttggatttttttaattggagttattgaaaatattacacaccggaatagtttcacatcacgtttccggtttgg 11433033  T
Q  205 taattttagaatataatttctctgtttcacgacacccacatgcaccggaaaggatttgttgtgaattccggtgtacattccggaaagatagga 297  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11433032 taattttagaatagaatttttctgtttcatgacacccacatgcaccggaaaggatttgttgtgaattccggtgtacattccggcaagatagga 11432940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 11432894 - 11432820
Alignment:
Q  374 tcagaaatacatattttgaagaatataatgtggggtgaactcataatgaattgggaactgttgaaagtgagggtg 448  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |||||||||||||||||    
T  11432894 tcagaaatacatattttgaagaatatcatgtgggctaaactcataatgatttgggaaatgttgaaagtgagggtg 11432820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 509 - 564
Target Start/End: Complemental strand, 11432759 - 11432704
Alignment:
Q  509 agtaggggtgaaagtacatgcgttggggtatggggtaaaatttccttatatggagc 564  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  11432759 agtaggggtgaaagtacatgcgttggggtatggggtaaaattccctgatgtggagc 11432704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 318
Target Start/End: Complemental strand, 40040776 - 40040488
Alignment:
Q  26 actactgcacccttctcattattggacccaccagttaagaataattttaaacaagatatgcataagttaagaataaaggctagctatgatcttatagatt 125  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||||||    
T  40040776 actattgcacccttctcactattggatccaccagttaagaataattttaaacaagatatgcataagt----aataaagactagctatgatcttatagatt 40040681  T
Q  126 acagaagttggannnnnnnaattggagttattgaaaatattacacaccggaatagtttcacatcacgtttccggtttggtaattttagaatataatttct 225  Q
    ||||| ||||||       |||||||||||||||||| |||| |||||| || | || |||||||||||||||||||| ||||||||||||| ||||| |    
T  40040680 acagaggttggatttttttaattggagttattgaaaaaattatacaccgaaaaacttgcacatcacgtttccggtttgctaattttagaatagaattttt 40040581  T
Q  226 ctgtttcacgacacccacatgcaccggaaaggatttgttgtgaattccggtgtacattccggaaagataggattattcaaataattttcggaa 318  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40040580 cagtttcacgacacccacatgcaccggaaaggatttgttgagaattccggtgtacattccggaaagataggagtattcaaataattttcggaa 40040488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 40040093 - 40040021
Alignment:
Q  376 agaaatacatattttgaagaatataatgtggggtgaactcataatgaattgggaactgttgaaagtgagggtg 448  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||||||    
T  40040093 agaaatacatattttgaagaatatcatgtggggtgaactcataatgaattgaaaaatgttgaaagtgagggtg 40040021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 40039960 - 40039909
Alignment:
Q  509 agtaggggtgaaagtacatgc--gttggggtatggggtaaaatttccttata 558  Q
    |||||||||||||||||||||  || |||||||||| |||||||||| ||||    
T  40039960 agtaggggtgaaagtacatgcgtgtcggggtatgggataaaatttccgtata 40039909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 24473896 - 24473851
Alignment:
Q  510 gtaggggtgaaagtacatgcgttggggtatggggtaaaatttcctt 555  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||    
T  24473896 gtaggggtgaaagtacatgtgttggggtatagggtcaaatttcctt 24473851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 42150020 - 42150064
Alignment:
Q  510 gtaggggtgaaagtacatgcgttggggtatggggtaaaatttcct 554  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||    
T  42150020 gtaggggtgaaagtacatgtgttggggtgtagggtaaaatttcct 42150064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 47524478 - 47524518
Alignment:
Q  405 ggggtgaactcataatgaattgggaactgttgaaagtgagg 445  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  47524478 ggggtgaactcataatgaattgggaaatgttaaaagtgagg 47524518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 553
Target Start/End: Complemental strand, 40606132 - 40606089
Alignment:
Q  510 gtaggggtgaaagtacatgcgttggggtatggggtaaaatttcc 553  Q
    ||||||||||||||||||| | |||||||| |||||||||||||    
T  40606132 gtaggggtgaaagtacatgtgctggggtatagggtaaaatttcc 40606089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University