View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_12 (Length: 578)
Name: NF2748_high_12
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Complemental strand, 43550015 - 43549461
Alignment:
| Q |
16 |
cacaacagcctgctgcagctgtgcggaaatgaccaaggcagcggcaaggcaattacagttggcaactgcaatgacaacactgagtttctggttgtgtgtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
43550015 |
cacaacagcctgctgcagctgtgcggaaatgaccaaggcagcggcaaggcaacgacagttggcgactgcaatgacaacacagagtttctggttgtgtgtc |
43549916 |
T |
|
| Q |
116 |
tcgcgtcccttttactcatattttgaagttttttcattaaaattccaagttgctc-tgaggtaacatcaagatggtctaatttgtcagacggtactcaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43549915 |
tcgcgtcccttttactcatattttgaagttttttcattaaaattccaagttgctcatgaggtactatcaagatggtctaatttgtcagacggtactcaag |
43549816 |
T |
|
| Q |
215 |
ttcccgcactaacatagtaacattagataatctacgtccaaagaaaagccagaaaatgggtacggaagtttgtaggcatgcttgcaaaatgtatttgaaa |
314 |
Q |
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| T |
43549815 |
ttcccgcactaacatagtaacattagataatctacgtccaaagaaaagccagaaaatgggtacggaagtttgtaggcatgcttgcaaaatgtatttgaaa |
43549716 |
T |
|
| Q |
315 |
taaaatgcctgatcaggaaataaaacacagaaggaaaagtctaggttaaatactacacactaatataagggctaaaaaattcatattaatcttgtcggaa |
414 |
Q |
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| T |
43549715 |
taaaatgcctgatcaggaaataaaacacagaaggaaaagtctaggttaaatactacacactaatataagggctaaaaaattcatattaatcttgtcggaa |
43549616 |
T |
|
| Q |
415 |
atttaggattacggtacaaatcannnnnnncgtcgtaatcatagttataaaatggcagccttcaaaacatatcttcataaccaaacaaaatccatatgca |
514 |
Q |
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| T |
43549615 |
atttaggattacggtacaaatcatttttttcgtcgtaatcatagttataaaatggcagccttcaaaacatatcttcataaccaaacaaaatccatatgca |
43549516 |
T |
|
| Q |
515 |
tcaacactaccgcctcaaggtctccacaacgtagtccgcatacaaggtcctttgc |
569 |
Q |
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| T |
43549515 |
tcaacactaccgcctcaaggtctccacaacgtagtccgcatacaaggtcctttgc |
43549461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 258 - 404
Target Start/End: Complemental strand, 17749486 - 17749338
Alignment:
| Q |
258 |
aaaagccagaaaatgggtacggaagtttgtaggcatgcttgcaaaatgtatttgaaataaaatgcctgatcaggaaataaaacacagaaggaaaagtcta |
357 |
Q |
| |
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|||||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
17749486 |
aaaagccacaatatgggcacggaagtttataggcatgcttgcaaaatgtatttgaaataaaatgcatgatcatgaaataaaacacaaaaggaaaagtcta |
17749387 |
T |
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| Q |
358 |
ggttaaatactacacactaa--tataagggctaaaaaattcatattaat |
404 |
Q |
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| T |
17749386 |
ggttaaatactacacactaatatataagggctaaaaaattcatattaat |
17749338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 17749775 - 17749586
Alignment:
| Q |
17 |
acaacagcctgctgcagctgtgcggaaatgacc-aaggcagcggcaaggcaattacagttggcaactgcaatgacaacactgagtttctggttgtgtgtc |
115 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| ||| |||||||| ||||| ||||||||| |||||||||||||| | |||||||||||||||| | |
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| T |
17749775 |
acaacagcctgctgcagcagtgtagaaatgaccgaagacagcggcagggcaacgacagttggcgactgcaatgacaacgcagagtttctggttgtgt--c |
17749678 |
T |
|
| Q |
116 |
tcgcgtcccttttactcatattttgaagttttttcattaaaattccaagttgct-ctgaggtaacatcaagatggtctaatttgtcagacgg |
206 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||| ||| ||||| |||||||| |
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| T |
17749677 |
tcacgtcccttttactcatattttgaagttttttcattaaaattccaagttgataatgagataccatcaagattgtcgaatttatcagacgg |
17749586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 445 - 566
Target Start/End: Complemental strand, 29369576 - 29369456
Alignment:
| Q |
445 |
cgtcgtaatcatagttataaaatggcagccttcaaaacatatcttcataaccaaacaaaatcc-atatgcatcaacactaccgcctcaaggtctccacaa |
543 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
29369576 |
cgtcgtaatcatagttataaaattgcagtcttcaaaacat--cttcaagaccaaacaaaatcccatatgcatcaatactaccgcctcaaactctccacaa |
29369479 |
T |
|
| Q |
544 |
cgtagtccgcatacaaggtcctt |
566 |
Q |
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||||||| ||||||||||||||| |
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| T |
29369478 |
cgtagtctgcatacaaggtcctt |
29369456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 457 - 566
Target Start/End: Complemental strand, 50901992 - 50901883
Alignment:
| Q |
457 |
agttataaaatggcagccttcaaaacatatcttcataaccaaacaaaatccatatgcatcaacactaccgcctcaaggtctccacaacgtagtccgcata |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||| ||||| ||||| |||||||||| |
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| T |
50901992 |
agttataaaatggcagccttcaaaacatatcttcgagaccaaacaaaatccatatgcatcaacaacaacacctcaagctctccgcaacgcagtccgcata |
50901893 |
T |
|
| Q |
557 |
caaggtcctt |
566 |
Q |
| |
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|||| ||||| |
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| T |
50901892 |
caagatcctt |
50901883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 236 - 391
Target Start/End: Complemental strand, 50902176 - 50902022
Alignment:
| Q |
236 |
attagataatctacgtccaaagaaaagccagaaaatgggtacggaagtttgtaggcatgcttgcaaaatgtatttgaaataaaatgcctgatcaggaaat |
335 |
Q |
| |
|
|||||| |||||| |||||||||||||||| || | | | | |||||||| ||||||||| |||| | |||||||||||||||| |||||||||||| |
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| T |
50902176 |
attagagaatctatgtccaaagaaaagccacaatagttgcatgaaagtttgtgggcatgcttacaaattctatttgaaataaaatgtgtgatcaggaaat |
50902077 |
T |
|
| Q |
336 |
aaaacacagaaggaaaagtctaggttaaatactacacactaatataagggctaaaa |
391 |
Q |
| |
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|||||||| |||| || || |||||||||||||| | ||||| ||||||||||||| |
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| T |
50902076 |
aaaacacaaaagg-aatgtttaggttaaatactataaactaaaataagggctaaaa |
50902022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 43585234 - 43585319
Alignment:
| Q |
289 |
ggcatgcttgcaaaatgtatttgaaataaaatgcctgatcaggaaataaaacacagaaggaaaagtctaggttaaatactacacacta |
376 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| || ||||||| |||||||||||||||| |||| |
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| T |
43585234 |
ggcatgcttgcaaaatctatttgaaataaaatgcataatcgggaaataaaacac--aacgaaaagtataggttaaatactacaaacta |
43585319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 50902309 - 50902264
Alignment:
| Q |
116 |
tcgcgtcccttttactcatattttgaag-ttttttcattaaaattc |
160 |
Q |
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|||||||||||| ||||||||||| ||| ||||||||||||||||| |
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| T |
50902309 |
tcgcgtccctttcactcatattttaaagtttttttcattaaaattc |
50902264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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