View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_14 (Length: 552)
Name: NF2748_high_14
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 134 - 552
Target Start/End: Original strand, 32364347 - 32364742
Alignment:
| Q |
134 |
cagcaagtaaattatggttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
233 |
Q |
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| T |
32364347 |
cagcaggtaaattttagttgcctttgaaatttagacttatattatgatataacaagcacttgtgtgtgttagaaattagaactaatgaaaataacttgtg |
32364446 |
T |
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| Q |
234 |
acggatttataagctgtttttaacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctac |
333 |
Q |
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| T |
32364447 |
acggatttataaactgtttttaacatatttatacaaatcatttaggacaaattatgaaaatagtgtt------acaggtcacaac-cataatatatcaac |
32364539 |
T |
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| Q |
334 |
cctcaaagagtttcagtagaagaaacatattttaagattgtaaaactaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaag |
433 |
Q |
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| T |
32364540 |
tctcaaagagtttcagtagaaggaacatacattaagattgtaaaactaagtt----------attctaacatgtatttcatatgattttcttgtaaaaag |
32364629 |
T |
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| Q |
434 |
aannnnnnnnnnnnnnnaaatttcctactcacacagacttgtaagcaattaaatagaaaaagtgatgctcactcaataactataatccgcatcctaacaa |
533 |
Q |
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| T |
32364630 |
aa------atacacacaagatttcctactcacacagacttgtaagcaattaaatagaaaaggtgatgctcactcaataactataatccgcatcctaacaa |
32364723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 254 - 552
Target Start/End: Original strand, 32376147 - 32376443
Alignment:
| Q |
254 |
taacatatttgtataaatcatgtaggacaaataatgaaaatagtgttacattcacaggttacaacatttaatatatctaccctcaaagagtttcagtaga |
353 |
Q |
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| T |
32376147 |
taacatatttgtataaatcatgtagggcaaataatgaaaatagtgttacattcacaggtcacaacatttaatatatctaccctcaaagagtttcagtaga |
32376246 |
T |
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| Q |
354 |
agaaacatattttaagattgtaaaac----taagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaagaannnnnnnnnnnnnn |
449 |
Q |
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| T |
32376247 |
aggaacatattttaagattgtaaaactaattaagttcatatatgtcattttaatatgtatttcatatgattttcttgtaaaaagaa------acacacac |
32376340 |
T |
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| Q |
450 |
naaatttcctactcacacagacttgtaagcaattaaatagaaaaagtgatgctcactcaataactataatccgcatcctaacaaaattgtttacatagaa |
549 |
Q |
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| T |
32376341 |
aagatttcctactcacacagacttgtaagcaattaaatagaaaaagtgatgctcactcaataactataatccgcatcctaacaaaatggtttacatagaa |
32376440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 32375976 - 32376151
Alignment:
| Q |
12 |
atcatcagttctggtaaaaatctactgtaattgtatggttctttaagtagtttcatacttaatccatttattattaggttaaatcatttacttgaggcct |
111 |
Q |
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| T |
32375976 |
atcattagttctggtaaaaatctactgtaattgtatggttccttaagtagtttcatacttaatccatttattataaggttaaatcatttacttgaggcct |
32376075 |
T |
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| Q |
112 |
cctctgccaagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
187 |
Q |
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| T |
32376076 |
cctctgccaagcgtgatgggagcagcaagtaaattatggttgcctttgaaatttagacttatattatgatataaca |
32376151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 32364244 - 32364303
Alignment:
| Q |
19 |
gttctggtaaaaatctactgtaattgtat--ggttctttaagtagtttcatacttaatcc |
76 |
Q |
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| T |
32364244 |
gttctggtaaatatctaccgtaattgtatatggttccataagtagtttcatacttaatcc |
32364303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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