View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_high_15 (Length: 549)

Name: NF2748_high_15
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_high_15
NF2748_high_15
[»] chr1 (8 HSPs)
chr1 (19-539)||(3523366-3523886)
chr1 (471-528)||(27497486-27497543)
chr1 (472-524)||(2551435-2551487)
chr1 (470-525)||(16920472-16920527)
chr1 (471-517)||(10042288-10042334)
chr1 (470-512)||(38806893-38806935)
chr1 (475-516)||(17519016-17519056)
chr1 (471-515)||(12574162-12574206)
[»] chr6 (8 HSPs)
chr6 (472-530)||(29235677-29235735)
chr6 (489-543)||(7282279-7282333)
chr6 (471-517)||(29236255-29236301)
chr6 (462-506)||(8013844-8013889)
chr6 (459-503)||(29236675-29236720)
chr6 (476-532)||(4323890-4323946)
chr6 (472-508)||(10338615-10338651)
chr6 (459-502)||(26493517-26493561)
[»] chr4 (10 HSPs)
chr4 (459-532)||(22402365-22402439)
chr4 (474-514)||(11262379-11262419)
chr4 (462-528)||(49477691-49477758)
chr4 (462-532)||(7367535-7367606)
chr4 (480-527)||(43843635-43843682)
chr4 (472-506)||(7422170-7422204)
chr4 (476-517)||(28373103-28373144)
chr4 (471-508)||(30075180-30075217)
chr4 (476-517)||(44768335-44768376)
chr4 (466-506)||(55002978-55003018)
[»] chr7 (5 HSPs)
chr7 (475-532)||(43395503-43395560)
chr7 (459-502)||(5500226-5500270)
chr7 (453-516)||(3121720-3121783)
chr7 (472-532)||(37603897-37603956)
chr7 (476-520)||(43434508-43434552)
[»] chr8 (12 HSPs)
chr8 (471-527)||(28478064-28478120)
chr8 (459-521)||(13650748-13650811)
chr8 (459-521)||(13709391-13709454)
chr8 (472-518)||(10491795-10491841)
chr8 (471-533)||(11556960-11557022)
chr8 (490-532)||(11815811-11815853)
chr8 (471-517)||(30185551-30185597)
chr8 (471-528)||(8217038-8217095)
chr8 (461-516)||(10440371-10440427)
chr8 (472-532)||(16852057-16852117)
chr8 (462-506)||(23559671-23559715)
chr8 (496-532)||(29072508-29072544)
[»] chr3 (10 HSPs)
chr3 (472-532)||(31652430-31652490)
chr3 (490-532)||(15544675-15544717)
chr3 (463-506)||(36895369-36895413)
chr3 (461-516)||(31702685-31702740)
chr3 (462-516)||(9681647-9681701)
chr3 (471-525)||(17105251-17105305)
chr3 (472-514)||(19730626-19730668)
chr3 (472-514)||(19751238-19751280)
chr3 (479-528)||(24847713-24847762)
chr3 (472-532)||(33990715-33990775)
[»] chr5 (5 HSPs)
chr5 (472-531)||(28735830-28735888)
chr5 (471-527)||(34806153-34806209)
chr5 (462-522)||(39301725-39301786)
chr5 (479-527)||(9175492-9175539)
chr5 (475-515)||(35509392-35509432)
[»] chr2 (6 HSPs)
chr2 (472-528)||(5047028-5047082)
chr2 (472-532)||(7205260-7205320)
chr2 (472-518)||(22556234-22556280)
chr2 (459-514)||(8518032-8518088)
chr2 (471-527)||(16047686-16047741)
chr2 (479-507)||(28148333-28148361)


Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 3523886 - 3523366
Alignment:
Q  19 gcttgagtgtttcttcaagaatatttgtttcgtcaattgtgtcggaattgaattgcaccttaatagacaaaaagaaagacaacatcagacatatcttaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523886 gcttgagtgtttcttcaagaatatttgtttcgtcaattgtgtcggaattgaattgcaccttaatagacaaaaagaaagacaacatcagacatatcttaac 3523787  T
Q  119 aatgctagctgtctttcaaaagtaagttatgagatataaggtatcagacaaaccaataatgtgtgtttgacattgtacgaacttttaaagcaatcacgat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523786 aatgctagctgtctttcaaaagtaagttatgagatataaggtatcagacagaccaataatgtgtgtttgacattgtacgaacttttaaagcaatcacgat 3523687  T
Q  219 tttcagacggtgttggtttgaactctgagactccttgtgtaacctgacagagagatatatacacgtcaagaagaaatatagaaccaataacttgtaaaaa 318  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523686 tttcggacggtgttggtttgaactctgagactccttgtgtaacctgacagagagatatatacacgtcaagaagaaatatagaaccaataacttgtaaaaa 3523587  T
Q  319 agagtgggttttaagcatcatagtgaaattttccttgcaagacgtggatattcaaccttgctcatgttgggcttcatacttttcaatcatcgtctaagta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3523586 agagtgggttttaagcatcatagtgaaattttccttgcaagacgtggatattcaaccttgctcatgttgggcttcatacttttcaatcatcatctaagta 3523487  T
Q  419 acacctaaacttcagactgcaggcatctctggcatccgttaccgacacatgtgttacattcaatcacttctattttatcaaattattatcggtgtctacg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3523486 acacctaaacttcagactgcaggcatctctggcatccgttaccgacacatgtgttacattcaatcacttctattttatcaaattattatcggtgtctacg 3523387  T
Q  519 tgtcagtgtcgtgtgcctatg 539  Q
    |||||||||||||||||||||    
T  3523386 tgtcagtgtcgtgtgcctatg 3523366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 27497543 - 27497486
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 528  Q
    ||||||||||  |||||||||||| ||||||||||||||||| |||| ||||||||||    
T  27497543 gttacattcacacacttctattttttcaaattattatcggtgcctacatgtcagtgtc 27497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 2551435 - 2551487
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcag 524  Q
    ||||||||||||||||| |||||   |||||||||||||||||||||||||||    
T  2551435 ttacattcaatcacttcaatttttgtaaattattatcggtgtctacgtgtcag 2551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 16920472 - 16920527
Alignment:
Q  470 tgttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagt 525  Q
    ||||||||||||| ||||| ||||| | |||||||| ||||||||||||| |||||    
T  16920472 tgttacattcaattacttccattttttaaaattattctcggtgtctacgtatcagt 16920527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 10042334 - 10042288
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctac 517  Q
    ||||||||||||||||||||||||  ||||||||||  |||||||||    
T  10042334 gttacattcaatcacttctattttcacaaattattactggtgtctac 10042288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 512
Target Start/End: Complemental strand, 38806935 - 38806893
Alignment:
Q  470 tgttacattcaatcacttctattttatcaaattattatcggtg 512  Q
    |||||||||||||||||| | |||| |||||||||||||||||    
T  38806935 tgttacattcaatcacttttgttttttcaaattattatcggtg 38806893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 516
Target Start/End: Complemental strand, 17519056 - 17519016
Alignment:
Q  475 cattcaatcacttctattttatcaaattattatcggtgtcta 516  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  17519056 cattcaatcacttctatttt-tcaaattattaccggtgtcta 17519016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 515
Target Start/End: Complemental strand, 12574206 - 12574162
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtct 515  Q
    ||||||||| | |||||||||||||| |||||||||| |||||||    
T  12574206 gttacattccaacacttctattttattaaattattattggtgtct 12574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 472 - 530
Target Start/End: Complemental strand, 29235735 - 29235677
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgt 530  Q
    |||||||||||||||||||| |||||||||||||||| ||||| |||||||||| ||||    
T  29235735 ttacattcaatcacttctatcttatcaaattattatcagtgtccacgtgtcagtatcgt 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 543
Target Start/End: Complemental strand, 7282333 - 7282279
Alignment:
Q  489 tattttatcaaattattatcggtgtctacgtgtcagtgtcgtgtgcctatgcttc 543  Q
    |||||| ||||||||||||||||||| | |||||||||||||||| || ||||||    
T  7282333 tattttttcaaattattatcggtgtcaatgtgtcagtgtcgtgtgtctctgcttc 7282279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 29236301 - 29236255
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctac 517  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||    
T  29236301 gttacattcaatcacttctattttctcaaattattattagtgtctac 29236255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 506
Target Start/End: Original strand, 8013844 - 8013889
Alignment:
Q  462 gacacatgtg-ttacattcaatcacttctattttatcaaattatta 506  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||    
T  8013844 gacacatgtggttacattcaatcacttatattttttcaaattatta 8013889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 503
Target Start/End: Complemental strand, 29236720 - 29236675
Alignment:
Q  459 accgacacatgtg-ttacattcaatcacttctattttatcaaatta 503  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  29236720 accgacacaagtgattacattcaatcacttctattttctcaaatta 29236675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 532
Target Start/End: Original strand, 4323890 - 4323946
Alignment:
Q  476 attcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    |||||| | |||||||||| | |||||||||||| |||| |||||||||| ||||||    
T  4323890 attcaaccccttctattttcttaaattattatcgttgtcaacgtgtcagtatcgtgt 4323946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 508
Target Start/End: Complemental strand, 10338651 - 10338615
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatc 508  Q
    ||||||||||||||||||||||| | |||||||||||    
T  10338651 ttacattcaatcacttctattttcttaaattattatc 10338615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 502
Target Start/End: Original strand, 26493517 - 26493561
Alignment:
Q  459 accgacacatgt-gttacattcaatcacttctattttatcaaatt 502  Q
    ||||| |||||| |||||||||||||||||||||||| |||||||    
T  26493517 accgatacatgtagttacattcaatcacttctattttctcaaatt 26493561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 22402439 - 22402365
Alignment:
Q  459 accgacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||| |||| ||||| ||||||| ||||||    
T  22402439 accgacacatgtggttacattcaatcacttctattttctcaatttattaccggtctctacatgtcagtatcgtgt 22402365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 11262419 - 11262379
Alignment:
Q  474 acattcaatcacttctattttatcaaattattatcggtgtc 514  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  11262419 acattcaatcacttctattttatcaaattattataggtgtc 11262379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 528
Target Start/End: Complemental strand, 49477758 - 49477691
Alignment:
Q  462 gacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 528  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||  || ||||||| ||||||||||    
T  49477758 gacacatgtgcttacattcaaccacttccattttatcaaattattcccgatgtctacatgtcagtgtc 49477691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 532
Target Start/End: Complemental strand, 7367606 - 7367535
Alignment:
Q  462 gacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    |||||||||| |||| ||||||||| |  ||||| |||||||||||| |||||||| |||| ||||||||||    
T  7367606 gacacatgtggttacgttcaatcaccttcattttctcaaattattattggtgtctatgtgttagtgtcgtgt 7367535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 527
Target Start/End: Original strand, 43843635 - 43843682
Alignment:
Q  480 aatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 527  Q
    |||||||| |||||| |||||||||||| ||||||||||||| |||||    
T  43843635 aatcacttttattttctcaaattattattggtgtctacgtgttagtgt 43843682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 506
Target Start/End: Complemental strand, 7422204 - 7422170
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattatta 506  Q
    ||||||||||||||||||||||| |||||||||||    
T  7422204 ttacattcaatcacttctattttctcaaattatta 7422170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 517
Target Start/End: Complemental strand, 28373144 - 28373103
Alignment:
Q  476 attcaatcacttctattttatcaaattattatcggtgtctac 517  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  28373144 attcaatcacttctattttctcaaagtattattggtgtctac 28373103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Complemental strand, 30075217 - 30075180
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatc 508  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  30075217 gttacattcaatcacttctgttttctcaaattattatc 30075180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 517
Target Start/End: Original strand, 44768335 - 44768376
Alignment:
Q  476 attcaatcacttctattttatcaaattattatcggtgtctac 517  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  44768335 attcaatcacttctattttctcaaagtattattggtgtctac 44768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 506
Target Start/End: Original strand, 55002978 - 55003018
Alignment:
Q  466 catgtgttacattcaatcacttctattttatcaaattatta 506  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  55002978 catgtggtacatccaatcatttctattttatcaaattatta 55003018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 43395560 - 43395503
Alignment:
Q  475 cattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||| ||| ||||    
T  43395560 cattcaatcacttttattttattaaattattatcgatgtctacgtgtcattgttgtgt 43395503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 502
Target Start/End: Original strand, 5500226 - 5500270
Alignment:
Q  459 accgacacatgtgtt-acattcaatcacttctattttatcaaatt 502  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  5500226 accgacacatgtgctcacattcaatcacttctattttatcaaatt 5500270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 516
Target Start/End: Original strand, 3121720 - 3121783
Alignment:
Q  453 tccgttaccgacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtcta 516  Q
    |||| |||||||||||||| |||||||||| |||||| || || ||||||||||| |||||||||    
T  3121720 tccggtaccgacacatgtggttacattcaaccacttccatatt-tcaaattattagcggtgtcta 3121783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 37603956 - 37603897
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    |||||||||||  |||| ||||| ||||||| ||||||||||| |||||| ||||||||||    
T  37603956 ttacattcaatttcttccatttt-tcaaattgttatcggtgtcgacgtgttagtgtcgtgt 37603897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 520
Target Start/End: Complemental strand, 43434552 - 43434508
Alignment:
Q  476 attcaatcacttctattttatcaaattattatcggtgtctacgtg 520  Q
    ||||||||||||  ||||| | |||||||||||||||||||||||    
T  43434552 attcaatcactttcattttcttaaattattatcggtgtctacgtg 43434508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 527
Target Start/End: Original strand, 28478064 - 28478120
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 527  Q
    |||||||||||||||||||||||| | |||||||||  |||||||||||||| ||||    
T  28478064 gttacattcaatcacttctatttttttaaattattacgggtgtctacgtgtctgtgt 28478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 13650811 - 13650748
Alignment:
Q  459 accgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgt 521  Q
    |||| ||||||| |||||||||| | ||||||||||| |||| ||| |||||||||||||||||    
T  13650811 accgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtctacgtgt 13650748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 13709454 - 13709391
Alignment:
Q  459 accgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgt 521  Q
    |||| ||||||| |||||||||| | ||||||||||| |||| ||| |||||||||||||||||    
T  13709454 accgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtctacgtgt 13709391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 10491841 - 10491795
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacg 518  Q
    |||||| ||||||||||||| ||||||||||||||| ||||| ||||    
T  10491841 ttacatacaatcacttctatcttatcaaattattattggtgtttacg 10491795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 533
Target Start/End: Original strand, 11556960 - 11557022
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgtg 533  Q
    |||||||||||||||||  ||||| |||||||||||  ||||||||| ||| ||||| |||||    
T  11556960 gttacattcaatcacttaaattttctcaaattattacaggtgtctacatgttagtgttgtgtg 11557022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 11815853 - 11815811
Alignment:
Q  490 attttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||| |||||||||||| |||||| |||||||||||||||||    
T  11815853 attttctcaaattattattggtgtcaacgtgtcagtgtcgtgt 11815811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 517
Target Start/End: Original strand, 30185551 - 30185597
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctac 517  Q
    ||||||||| |||||||| ||||||| |||||||||||| |||||||    
T  30185551 gttacattcgatcacttcgattttattaaattattatcgatgtctac 30185597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 8217038 - 8217095
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 528  Q
    ||||||||||||  |||||||||| | |||||||||||| |||||| |||| ||||||    
T  8217038 gttacattcaattccttctattttctaaaattattatcgttgtctatgtgtgagtgtc 8217095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 10440427 - 10440371
Alignment:
Q  461 cgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtcta 516  Q
    |||||||||| || |||||||||||||| |||||| | |||||||||||| ||||||    
T  10440427 cgacacatgtagtaacattcaatcacttttattttcttaaattattatcgatgtcta 10440371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 16852117 - 16852057
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||||||||||||||  ||||| | |||||||| || |||||||||| ||| ||||||||    
T  16852117 ttacattcaatcacttacattttcttaaattattgtcagtgtctacgtatcaatgtcgtgt 16852057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 506
Target Start/End: Complemental strand, 23559715 - 23559671
Alignment:
Q  462 gacacatgtgttacattcaatcacttctattttatcaaattatta 506  Q
    ||||||||| ||||||||||||||||| ||||| | |||||||||    
T  23559715 gacacatgtattacattcaatcacttcaattttttgaaattatta 23559671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 29072508 - 29072544
Alignment:
Q  496 tcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  29072508 tcaaattattatcggtgtcgacgtgtgagtgtcgtgt 29072544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 31652490 - 31652430
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||| ||| |||||| ||||    
T  31652490 ttacattcaatcacttctattttcttaaattattatcggtgactatgtgacagtgttgtgt 31652430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 15544717 - 15544675
Alignment:
Q  490 attttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||||||||||||||| ||||||| |||||||||||||||||    
T  15544717 attttatcaaattattagcggtgtcaacgtgtcagtgtcgtgt 15544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 36895413 - 36895369
Alignment:
Q  463 acacatgtg-ttacattcaatcacttctattttatcaaattatta 506  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  36895413 acacatgtgattacattcaatcacttatattttatcaaattatta 36895369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 31702740 - 31702685
Alignment:
Q  461 cgacacatgtgttacattcaatcacttctattttatcaaattattatcggtgtcta 516  Q
    |||||||| | ||||||||||||||| ||||||| | |||||||||| ||||||||    
T  31702740 cgacacatatattacattcaatcactactattttcttaaattattattggtgtcta 31702685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 516
Target Start/End: Original strand, 9681647 - 9681701
Alignment:
Q  462 gacacatgtgttacattcaatcacttctattttatcaaattattatcggtgtcta 516  Q
    |||| ||||| ||| |||||||||||   ||||||||||||||||||||||||||    
T  9681647 gacatatgtggtactttcaatcactttagttttatcaaattattatcggtgtcta 9681701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 525
Target Start/End: Complemental strand, 17105305 - 17105251
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagt 525  Q
    ||||||||||||||||| |||||| | ||||||||||  ||||||| ||||||||    
T  17105305 gttacattcaatcacttttattttcttaaattattattagtgtctatgtgtcagt 17105251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 514
Target Start/End: Complemental strand, 19730668 - 19730626
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtc 514  Q
    |||||| |||||||||||||||| | |||||||||||||||||    
T  19730668 ttacatacaatcacttctattttctaaaattattatcggtgtc 19730626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 514
Target Start/End: Complemental strand, 19751280 - 19751238
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtc 514  Q
    |||||| |||||||||||||||| | |||||||||||||||||    
T  19751280 ttacatacaatcacttctattttctaaaattattatcggtgtc 19751238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 24847713 - 24847762
Alignment:
Q  479 caatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 528  Q
    |||||||||||||||| | |||||||| ||||||||||| | ||||||||    
T  24847713 caatcacttctattttttgaaattattgtcggtgtctacatatcagtgtc 24847762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 33990775 - 33990715
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    ||||||| || |||||| ||||| |||||||||||| || ||||| |||| ||||||||||    
T  33990775 ttacatttaagcacttcaattttctcaaattattattggcgtctatgtgttagtgtcgtgt 33990715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 531
Target Start/End: Original strand, 28735830 - 28735888
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtg 531  Q
    ||||||||||||||||||||||| | ||||||||| | ||||||| ||||||||||||||    
T  28735830 ttacattcaatcacttctattttcttaaattatta-cagtgtctatgtgtcagtgtcgtg 28735888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 527
Target Start/End: Complemental strand, 34806209 - 34806153
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 527  Q
    |||||||||||  | ||| ||||| | ||||||||||||||||||||||||||||||    
T  34806209 gttacattcaagtaattccattttcttaaattattatcggtgtctacgtgtcagtgt 34806153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 522
Target Start/End: Complemental strand, 39301786 - 39301725
Alignment:
Q  462 gacacatgtg-ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtc 522  Q
    |||||||||| ||||||  ||||||||| |||||||||||||| |||| ||||||| |||||    
T  39301786 gacacatgtggttacataaaatcacttccattttatcaaattactatcagtgtctatgtgtc 39301725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 527
Target Start/End: Complemental strand, 9175539 - 9175492
Alignment:
Q  479 caatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 527  Q
    |||||||||||||||| | |||||||||||  |||||||||||||||||    
T  9175539 caatcacttctattttct-aaattattatcaatgtctacgtgtcagtgt 9175492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 35509392 - 35509432
Alignment:
Q  475 cattcaatcacttctattttatcaaattattatcggtgtct 515  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  35509392 cattcaatgacttctactttttcaaattattatcggtgtct 35509432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 5047028 - 5047082
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtc 528  Q
    ||||||||||||||||||||||||||||| |||   ||||||||| |||||||||||    
T  5047028 ttacattcaatcacttctattttatcaaactat--ccggtgtctatgtgtcagtgtc 5047082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 7205320 - 7205260
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgtcgtgt 532  Q
    |||||||||||||||| |||||| | | ||||||||| || | ||||||||||||||||||    
T  7205320 ttacattcaatcacttatattttctaatattattatcagtttttacgtgtcagtgtcgtgt 7205260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 22556280 - 22556234
Alignment:
Q  472 ttacattcaatcacttctattttatcaaattattatcggtgtctacg 518  Q
    ||||||||||||||||||||||| | ||||||||| | |||||||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacctgtgtctacg 22556234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 8518088 - 8518032
Alignment:
Q  459 accgacacatgt-gttacattcaatcacttctattttatcaaattattatcggtgtc 514  Q
    |||||||||| | |||||||||||| ||||||||||| ||||||| |||| ||||||    
T  8518088 accgacacatttagttacattcaattacttctattttctcaaattgttattggtgtc 8518032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 527
Target Start/End: Original strand, 16047686 - 16047741
Alignment:
Q  471 gttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagtgt 527  Q
    |||||||||||||||||||| ||| | |||||||||| |||||| || |||||||||    
T  16047686 gttacattcaatcacttcta-tttcttaaattattattggtgtccacatgtcagtgt 16047741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 507
Target Start/End: Complemental strand, 28148361 - 28148333
Alignment:
Q  479 caatcacttctattttatcaaattattat 507  Q
    |||||||||||||||||||||||||||||    
T  28148361 caatcacttctattttatcaaattattat 28148333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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