View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_16 (Length: 546)
Name: NF2748_high_16
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 528
Target Start/End: Complemental strand, 13968221 - 13967701
Alignment:
| Q |
11 |
cataggtccaagtgaataaggaacaccagacttcgcaatccaagtatcacgtgcagttgcattagcaatctcaaagaatttaccagggtaatattcagct |
110 |
Q |
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| T |
13968221 |
cataggtccaagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagct |
13968122 |
T |
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| Q |
111 |
gctacatttgaagctaaaaccttaacaccaggccatttaactcttaaatttgggtcaccaccaggacctttattattgtactcataaaaagtacatgtat |
210 |
Q |
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| T |
13968121 |
gctacatttgaagttaaaaccttaacaccatgccatttaactcttaaatttgtgtcagcaccaggacctttattattgtactcataaaaagtacatgtat |
13968022 |
T |
|
| Q |
211 |
ccttaaaagcacctcccaccattggcatgtaaccttcaggggcaaacatagcatcaatggttgagtccattatgacaactttggaatatagcttccatgg |
310 |
Q |
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| T |
13968021 |
ccttaaaagcacctcccaccattggcatgtaaccttcaggggcaaacatagcatcaatggttgagtccattatgacaactttggaatatagcttccatgg |
13967922 |
T |
|
| Q |
311 |
tcttcctaggaaagataatttgggtgttaccgatgttagcgctggttcacctgttttgaaaatacgaga---agaaattattattaataacggtgacaat |
407 |
Q |
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| T |
13967921 |
tcttcctaggtaagataatttgggtgttaccgatgttagtgctggttcacctgttttgaaaatacgagaagaagaaattattattaataacggtgacaat |
13967822 |
T |
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| Q |
408 |
aaaattttaattttaannnnnnnnnngtttaactgcggttcacctgtgaagtgagaacttaggaaaacgagagcagttgcactgttttgtttatctcgtc |
507 |
Q |
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| T |
13967821 |
aaaattttaattttaattttttttttgtttaactgcggttcacctgtgaagtgagaacttaggaaaacgagagcacttgcactgttttgtttatctcgtc |
13967722 |
T |
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| Q |
508 |
cacctgcgattactagacatt |
528 |
Q |
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| T |
13967721 |
cacctgcggttactagacatt |
13967701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 13978307 - 13978096
Alignment:
| Q |
11 |
cataggtccaagtgaataaggaacaccagacttcgcaatccaagtatcacgtgcagttgcattagcaatctcaaagaatttaccagggtaatattcagct |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13978307 |
cataggtccaagtgaataaggaacaccagacttcacaatccaagtatcacgtgcagttgcattaacaatctcaaagaatttaccagggtaatattcagct |
13978208 |
T |
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| Q |
111 |
gctacatttgaagctaaaaccttaacaccaggccatttaactcttaaatttgggtcaccaccaggacctttattattgtactcataaaaagtacatgtat |
210 |
Q |
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| T |
13978207 |
gctacatttgaagttaaaaccttaacaccatgccatttaactcttaaatttgtgtcagcaccaggacctttattattgtactcataaaaagtacatgtat |
13978108 |
T |
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| Q |
211 |
ccttaaaagcac |
222 |
Q |
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| T |
13978107 |
ccttaaaagcac |
13978096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 13961049 - 13960734
Alignment:
| Q |
19 |
caagtgaataaggaacaccagacttcgcaatccaagtatcacgtgcagttgcattagcaatctcaaagaatttaccagggtaatattcagctgctacatt |
118 |
Q |
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| T |
13961049 |
caagtgaataaggaactccagacttcacaatccaagtatcacgatcggttgcattcgcaatctcaaagaatttaccgggataaaaagcagctgcttcagt |
13960950 |
T |
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| Q |
119 |
tgaagctaaaaccttaacaccaggccatttaactcttaaatttgggtcaccaccaggacctttattattgtactcataaaaagtacatgtatccttaaaa |
218 |
Q |
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| T |
13960949 |
tgaagatatactcttaacaccaggccatttaactctttttgatgtgtcagcaccaggacctttattattgtactcataaaatgtacatgtatctttaaaa |
13960850 |
T |
|
| Q |
219 |
gcacctcccaccattggcatgtaaccttcaggggcaaacatagcatcaatggttgagtccattatgacaactttggaatatagcttccatggtcttccta |
318 |
Q |
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| T |
13960849 |
gcacttcccatccatggcatgtaaccttcaggatcaaaaatgtcatcgatgtttgaatccataataacaactttggaatatgacttccatggtcttccta |
13960750 |
T |
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| Q |
319 |
ggaaagataatttggg |
334 |
Q |
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|| ||| || |||||| |
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| T |
13960749 |
ggtaagctattttggg |
13960734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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