View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_20 (Length: 521)
Name: NF2748_high_20
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 54692809 - 54693292
Alignment:
| Q |
1 |
attatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54692809 |
attatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgtt |
54692908 |
T |
|
| Q |
101 |
ataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcctctgctgt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54692909 |
ataatatttggtagtgcccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgccac------ |
54693002 |
T |
|
| Q |
201 |
gagctccaatccacctccccttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatctttaattagctgcactgcacac |
300 |
Q |
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| T |
54693003 |
------caatccacctccccttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatctttaattagctgcactgcacac |
54693096 |
T |
|
| Q |
301 |
atctaagagtcttagggatccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgagtgagtgagtggaagctgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54693097 |
atctaagagtcttagggatccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgagtgagtga----aagctgaa |
54693192 |
T |
|
| Q |
401 |
ttaaattttcaacacactcgaccaaatctcgcaagcctccaatcttatggtgaagcaatgacgaagaggtttcattggaagaccttagtaaggtgtccaa |
500 |
Q |
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| T |
54693193 |
ttaaattttcaacacactcgaccaaatctcgcaagcctccaatcttatggtgaagcaatgacgaggaggtttcattggaagaccttagtaaggtgtccaa |
54693292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 9 - 448
Target Start/End: Original strand, 54700175 - 54700593
Alignment:
| Q |
9 |
aaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatt |
108 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||| ||||||| | |||| | ||||||||| ||||||||||| |||||||| || || |
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| T |
54700175 |
aaatgtagatagggttgccacttcaacatcttgtaataagctaatcaaagccact-----gtttgatggtcattgtttgtagataagatgttgctatgtt |
54700269 |
T |
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| Q |
109 |
tggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatttctttgcctctgctgtgagctcca |
208 |
Q |
| |
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||||| | |||||||||||| |||||||||||| |||||||||||||||||||| ||| ||| ||| ||||||||| |||||||| |||||||||| |
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| T |
54700270 |
tggtatttcccttcaaatttgccaaggctttggagatggcctttttcactacctt----tcttgatgtcatgaatttcttagcctctgcagtgagctcca |
54700365 |
T |
|
| Q |
209 |
atccacctccccttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatctttaattagctgcactgcacacatctaaga |
308 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| || ||||||||||| | |
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| T |
54700366 |
atccatctccccttcttcttatgatggattgaagttcccttgtacattcttttgtatgcagtaaagcatctttg----gctgcgctacacacatctaata |
54700461 |
T |
|
| Q |
309 |
gtcttagggatccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgagtgagtgagtggaagctgaattaaattt |
408 |
Q |
| |
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| |||| ||||||||| || | || ||||||||| || |||||||||||||||| ||| ||||||| |||||||||||||||||||| || ||| |
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| T |
54700462 |
gccttaaggatccatccaagaggttatttacccaattttcttgatgctcatggagaag----tgcatct----tgagtgagtggaagctgaatcaatttt |
54700553 |
T |
|
| Q |
409 |
tcaacacactcgaccaaatctcgcaagcctccaatcttat |
448 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||| |
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|
| T |
54700554 |
tcaacacactcaatcaaatctcgcaagcctccaattttat |
54700593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 220 - 497
Target Start/End: Original strand, 54688444 - 54688712
Alignment:
| Q |
220 |
cttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatctttaattagctgcactgcacacatctaagagtcttagggat |
319 |
Q |
| |
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||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| || |||| ||| |
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| T |
54688444 |
cttcttcttatgagggattgaagttcccttgtgcattcttttgtgtgaattaaagcatct----ttagctgcactacacacatctaatagccttaaggaa |
54688539 |
T |
|
| Q |
320 |
ccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgagtgagtgagtggaagctgaattaaattttcaacacactc |
419 |
Q |
| |
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| T |
54688540 |
ccatccaaaaggttatttaccccattttcttgatgctcatgtagaag----tgcatct----tgtgttagtggaagctgaaccaatttttcaacacactc |
54688631 |
T |
|
| Q |
420 |
gaccaaatctcgcaagcctccaatcttatggtgaagca---atgacgaagaggtttcattggaagaccttagtaaggtgtc |
497 |
Q |
| |
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|| ||| | | ||||||| |||| |||||| || || |||| || ||||||||||||||||| |||| ||||||||| |
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| T |
54688632 |
gatcaagttttgcaagccatcaattttatggaaaatcaatgatgatgaggaggtttcattggaagatcttaataaggtgtc |
54688712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 54688230 - 54688379
Alignment:
| Q |
9 |
aaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatt |
108 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||| || || |
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| T |
54688230 |
aaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaag-----ccactgtttgatggtctttgtttgtagataagatgttgctatttt |
54688324 |
T |
|
| Q |
109 |
tggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactacctt |
163 |
Q |
| |
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||| | | ||||||||||| ||||| |||||| || | |||| |||||||||| |
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| T |
54688325 |
tggcatttcccttcaaatttaccaaggttttggagattgactttctcactacctt |
54688379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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