View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_21 (Length: 508)
Name: NF2748_high_21
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_21 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 5744424 - 5743917
Alignment:
| Q |
1 |
ctaatagggagtccccaaaaacatataatgcgggtgcaaggggaagggtaaagattggggagacgaggttaagggaaaagaatgagaaaaacataacaaa |
100 |
Q |
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| T |
5744424 |
ctaatagggagtccccaaaaacatataatgcgggtgcaaggggaagggtaaagattggggagaggaggttaagggaaaagaatgagaaaaacataacaaa |
5744325 |
T |
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| Q |
101 |
aatcatttgtttcattgtcattttcaatagataataaaacactagaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctctt |
200 |
Q |
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| T |
5744324 |
aatcatttgtttcattgtcattttcaatagataataaaacactagaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctctt |
5744225 |
T |
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| Q |
201 |
gctctacttatagaagagatcttcaaaggatggtaacataaggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaa |
300 |
Q |
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| T |
5744224 |
gctctacttatagaagagatcttcaaaggatggtaacataaggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaa |
5744125 |
T |
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| Q |
301 |
gtgttgcatgnnnnnnnnagcacaaaatagtaaaattctcgtgcattcgcatattgaggcgagaataatgtacacatttctgttgtgtatatagaatatg |
400 |
Q |
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| T |
5744124 |
gtgttgcatgttttttttagcacaaaatagtaaaattctcgtgcattcgcatattgaggcgagaataatgtacacatttctgttgtgtatatagaatatg |
5744025 |
T |
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| Q |
401 |
gtgcagggaaggcaagctagttgcgtgctgttgctagatatgagttggtatgaaagataggtacaacttactggtttgtagcattgggtgcgtgaagatg |
500 |
Q |
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| T |
5744024 |
gtgcagggaaagcaaactagttgcgtgttgttgctagatatgagttggtatgaaagataggtacgacttactggtttgtagcattgggtgcgtgaagata |
5743925 |
T |
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| Q |
501 |
tggaaggc |
508 |
Q |
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| T |
5743924 |
tggaaggc |
5743917 |
T |
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