View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_24 (Length: 474)
Name: NF2748_high_24
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 80 - 462
Target Start/End: Original strand, 22203775 - 22204179
Alignment:
| Q |
80 |
aaatttattattatattccatactttaagtgaaaaatattaagttgaaaatcataattatgaattgtaaagtttttattattagaattctcatacaagtt |
179 |
Q |
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| T |
22203775 |
aaatatattattatattccatactttaagtgaaaaatattaagtggaaaatcataattatgaattgtaaagtttttattattagaattctcatacaagtt |
22203874 |
T |
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| Q |
180 |
atttttatttgaccggttctatgctaacaaa----------------------aaatcaatcctttaatctctccgagtcatcaaagtatatgtgcagtt |
257 |
Q |
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| T |
22203875 |
atttttatttgaccggttctatgctaacaaaccattcctttcactaccaaaaaaaaccattcctttaatctctctgagtcatcaaagtatatgtgcagtt |
22203974 |
T |
|
| Q |
258 |
tttcatatagctatccttcaaaagaataagatggcataatttttgcattacttgagtgcttctcaaacgtgttgtttaacaaatatccctatatttatgt |
357 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22203975 |
tttcatatagctatccttcaaaacaataagttggcatagtttttgcattacttgactgcttctcaaacgtgttgtttaacaaatatccctatatttatgt |
22204074 |
T |
|
| Q |
358 |
tatcaatgagtgggtttcgaagaagctgaattttttacgtgtatactcccacgtttcaattatttgttgcgtacacttcctggtacattatattctttga |
457 |
Q |
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| T |
22204075 |
tatcaatgagtgggtttcaaagaagctgaattttttacgtgtatactcccacgtttcaattatttgttgcgtacacttcctggtacattatattctttga |
22204174 |
T |
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| Q |
458 |
ggatt |
462 |
Q |
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| T |
22204175 |
ggatt |
22204179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 269 - 462
Target Start/End: Complemental strand, 22230752 - 22230560
Alignment:
| Q |
269 |
tatccttcaaaagaataagatggcataatttttgcattacttgagtgcttctcaaacgtgttgtttaacaaatatccctatatttatgttatcaatgagt |
368 |
Q |
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||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22230752 |
tatccttcaaac-aataagttggcatagtttttgcattacttgactgcttctcaaacgtgttgtttaacaaatatccctatatttatgttatcaatgagt |
22230654 |
T |
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| Q |
369 |
gggtttcgaagaagctgaattttttacgtgtatactcccacgtttcaattatttgttgcgtacacttcctggtacattatattctttgaggatt |
462 |
Q |
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| T |
22230653 |
gggtttcaaagaagctgaattttttacgtgtatactcccacgtttcaattatttgttgcgtacacttcctggtacattatattctttgaggatt |
22230560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 80 - 343
Target Start/End: Original strand, 22250596 - 22250855
Alignment:
| Q |
80 |
aaatttattattatattccatactttaagtgaaaaatattaagttgaaaatcataattatgaattgtaaagtttttattattagaattctcatacaagtt |
179 |
Q |
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|||| |||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||| |
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| T |
22250596 |
aaatatattattatattcctta-tttaagtgagaaatatttagttgaaaatcataattatgaattataatgtttttgttattagaattctcagttaagtt |
22250694 |
T |
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| Q |
180 |
atttttatttgaccggttctatgctaacaaaaaatcaatcctttaatctctccgagtcatcaaagtatatgtgcagtttttcatatagctatccttcaaa |
279 |
Q |
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|| ||||||||||||||||||| ||||| ||| || |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
22250695 |
atatttatttgaccggttctattctaac---aaaccattcctataatctctatgagtcatcaaagcatatgtgcagtttttcatatagctatcctttaaa |
22250791 |
T |
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| Q |
280 |
agaataagatggcataatttttgcattacttgagtgcttctcaaacgtgttgtttaacaaatat |
343 |
Q |
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| ||| || ||||||| |||| || ||||||| | ||||||||||||||||||||||||||| |
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| T |
22250792 |
aaaatgagttggcatacttttatcactacttgactctttctcaaacgtgttgtttaacaaatat |
22250855 |
T |
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