View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_28 (Length: 453)
Name: NF2748_high_28
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 31 - 440
Target Start/End: Complemental strand, 824651 - 824225
Alignment:
| Q |
31 |
agagaaaacagaattatcaaatgtaatcacatgtcccaacgtattaaacaccga-----------------aaaggtcttcgatatgaaaagttaattca |
113 |
Q |
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| T |
824651 |
agagaaaacagaattatcaaatgtaatcacatgtcccaacgtattaaacaccgacatgtatgaaacaccgaaaaggtcttcgatatgaaaagttaattca |
824552 |
T |
|
| Q |
114 |
acatatatcgagataacatgcatactattcataatgtgttgggtacaatgtggatttatctatgcggagagacactgatgtagaaaatgctttccacata |
213 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
824551 |
acatatatcgaggtaacatgcatactatttataatgtgttgggtacaatgtggatttatctatgcggagagacactgatgtagaaaatgctttccacata |
824452 |
T |
|
| Q |
214 |
aaataagagcatgaacattgattcatatatgctcttgtcaatttgggtaagtctaagtttgtggagattgggaacatagtgccatagatgagtccatctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
824451 |
aaataagagcatgaacattgattcatatatgctcttgtcaatttgggtaagtctaagtttgtggagattgggaacatagtgccatagatgagtccatctc |
824352 |
T |
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| Q |
314 |
ttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagaggatatcgtcaggtaaactgctgatagtatccatctgcg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
824351 |
ttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgtggcagaggatatcgtcaggtaaattgctgatagtatccatctgcg |
824252 |
T |
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| Q |
414 |
ctgctgctgctgttggttagggttttg |
440 |
Q |
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| T |
824251 |
ctgctactgctgttggttagggttttg |
824225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 399
Target Start/End: Original strand, 990870 - 990989
Alignment:
| Q |
280 |
attgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagaggata |
379 |
Q |
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| T |
990870 |
attgggaagataatgccagagattagtccacctcttggacaaaacgcttgtagcaactgcttcttttgtggatacaaatgagagaatgcggaaaaggatt |
990969 |
T |
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| Q |
380 |
tcgtcaggtaaactgctgat |
399 |
Q |
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||||| || ||||||||||| |
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| T |
990970 |
tcgtcgggcaaactgctgat |
990989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 367
Target Start/End: Original strand, 1013092 - 1013181
Alignment:
| Q |
278 |
agattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatg |
367 |
Q |
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| T |
1013092 |
agattgggaacatgatgccataggtgaatccatctctttgatagaatgcttgttgcaactgattctttggttgtgagaaaagagagaatg |
1013181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 35766399 - 35766297
Alignment:
| Q |
294 |
gccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgcggcagaggatatcgtcaggtaaact |
393 |
Q |
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|||| |||||||||||||||||||||||||| ||||| ||||| | | || ||||| ||||||||||||||| |||| || | |||||| |||||||| |
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| T |
35766399 |
gccaaagatgagtccatctcttggacaaaacgcttgtggcaacggcctcttgggtggagacaaaagagagaatgtggcaaagaacatcgtctggtaaact |
35766300 |
T |
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| Q |
394 |
gct |
396 |
Q |
| |
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||| |
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| T |
35766299 |
gct |
35766297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 22054600 - 22054516
Alignment:
| Q |
284 |
ggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggtgggaacaaaagagagaatgc |
368 |
Q |
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|||||| |||| ||||||||||||||||| |||||||||| |||||| |||| || | |||||| | || ||||||||||||| |
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| T |
22054600 |
ggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttgtaagtaaagagagaatgc |
22054516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 40639961 - 40639890
Alignment:
| Q |
277 |
gagattgggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaactggttttttggt |
348 |
Q |
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| T |
40639961 |
gagattaggaacatggtgccatagatgaatccatctctttgaaagaatgcttgttgcaactgattctttggt |
40639890 |
T |
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