View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_3 (Length: 773)
Name: NF2748_high_3
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 193 - 714
Target Start/End: Complemental strand, 29323372 - 29322845
Alignment:
| Q |
193 |
ataatatatgaaactaaaataaatcaccaacaccgacggatacccgtacagattactagttacagggtaagagtcatggctgaacccaaaaatttgttat |
292 |
Q |
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| T |
29323372 |
ataatatatgaaactaaaataaatcaccaacaccgacggatacccgtacagattactagttacagggtaagagtcatggctgcccccaaaa-tttgttat |
29323274 |
T |
|
| Q |
293 |
atatgttgcgtgggagtcatcacatatatttcatggagcgtagt----aagttgtagttttgcatttaataggttttgtcgtacaaccaaactagataca |
388 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29323273 |
atatgttacgtgggagtcatcacatatatttcatggagcgtagtggctaagttgtagttttgcatttaattggttttgtcgtacaaccaaactagataca |
29323174 |
T |
|
| Q |
389 |
taggtaannnnnnnaactacttttaccctatttaattatatatacataaaataccctttaattgaatatagttttttcaatgactcatttatttcactac |
488 |
Q |
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| T |
29323173 |
taggtaatttttttaactacttttaccctatttaattatatatacataaaataccctttaattgaatatagttttttcaatgactcatttatttcactac |
29323074 |
T |
|
| Q |
489 |
caaa-aaaataactatttttctt--nnnnnnnnnngactcttttatttttcacgaaccctatctgtaaatgatatttttgagaattgattttgccatnnn |
585 |
Q |
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|||| |||||||||||||||| | |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29323073 |
caaaaaaaataactatttttcctaaaaaaaaaagagactcttttatttttcacaaaccctatctataaatgatatttttgagaattgattttgccataaa |
29322974 |
T |
|
| Q |
586 |
nnnngattagtgcgcaatttattatcgagtggtgataggcataccaccataggtggtaaagaccatttgacctccacatgaaaaattgacacttggcaaa |
685 |
Q |
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| T |
29322973 |
aaaagattagtgcacaatttattatcgagtggtgataggcataccatcataggtggcaaacaccatttgacctccacataaaaaattgacacttggcaaa |
29322874 |
T |
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| Q |
686 |
attaactgttcaaaatgttccaaaaaaga |
714 |
Q |
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| T |
29322873 |
attaactgttcaaaataatccaaaaaaga |
29322845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 29323711 - 29323529
Alignment:
| Q |
17 |
acaagttatcgctgatacatattatgaaataataattatatacaacttttaaaataagcgtcatacactagagaagttgttagtgataaaatgttttaat |
116 |
Q |
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| T |
29323711 |
acaagttatcgttgatacatattatgaaataataattatatacaacttttaaaataagtgtcatacactagagaagttgttagtgatcaaaggttttaat |
29323612 |
T |
|
| Q |
117 |
t-aaatattata-atggaaaaagttatcgctgatacatattttaaaataattattatgcataagataagttgtcattgataata |
198 |
Q |
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| T |
29323611 |
taaaatattatacatgaaaaaagttatcact-atacatattttaaaataattattatgcacaagataagttgtcattgataata |
29323529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 612 - 685
Target Start/End: Original strand, 27007804 - 27007877
Alignment:
| Q |
612 |
gagtggtgataggcataccaccataggtggtaaagaccatttgacctccacatgaaaaattgacacttggcaaa |
685 |
Q |
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| T |
27007804 |
gagtggtgataggcatacctccttaggtggcaaacaccatttgacctccacacaaaaaattgacacatggcaaa |
27007877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 677
Target Start/End: Complemental strand, 22363573 - 22363508
Alignment:
| Q |
612 |
gagtggtgataggcataccaccataggtggtaaagaccatttgacctccacatgaaaaattgacac |
677 |
Q |
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| T |
22363573 |
gagtggtgataggcatacccctttaggtggcaaacaccatttgacctccacataaaaaattgacac |
22363508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 677
Target Start/End: Original strand, 1493356 - 1493421
Alignment:
| Q |
612 |
gagtggtgataggcataccaccataggtggtaaagaccatttgacctccacatgaaaaattgacac |
677 |
Q |
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| T |
1493356 |
gagtggtgataggcatacctccttaggtggcaaacaccatttgacctccacacaaaaaattgacac |
1493421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 11810168 - 11810208
Alignment:
| Q |
135 |
aagttatcgctgatacatattttaaaataattattatgcat |
175 |
Q |
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| T |
11810168 |
aagttatcgttgatacatattttaaaataagtattatgcat |
11810208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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