View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_35 (Length: 425)
Name: NF2748_high_35
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 42015223 - 42015619
Alignment:
| Q |
1 |
catggcaagatggtgttcttggaacaaattgtcctattccaccaaaatggaactggacttaccaatttcaagtgaaggatcagattggaagttttttcta |
100 |
Q |
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| T |
42015223 |
catggcaagatggtgttcttggaacaaattgtcctattccaccaaaatggaactggacttaccaatttcaagtgaaggatcagattggaagttttttcta |
42015322 |
T |
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| Q |
101 |
ctttccttcacttaattttcaaagagcagctggtggatttggtggtttcatcataaacaaccgacccgtcatttcggttccttttgatactccagaaggg |
200 |
Q |
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| T |
42015323 |
ctttccttcacttaattttcaaagagcagctggtggatttggtggtttcatcataaacaaccgacccgtcatttcggttccttttgatactccagaaggg |
42015422 |
T |
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| Q |
201 |
gacattgttgtttttattggtgattggtacacgcgcaatcacacggttag--ttgtgttttttgagttgagtttatggaaagtttctgattctgtgttag |
298 |
Q |
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| T |
42015423 |
gacattgttgtttttattggtgattggtacacgcgcaatcacacggttagttttgtgttttttgagttgagttta-----------tgattctgtgttag |
42015511 |
T |
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| Q |
299 |
attagattggatgttagatgagttgattaaagttttttgtaattaatgtaggctttgagaaaggctctagatgatggaaaagatcttggcatgccagatg |
398 |
Q |
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| T |
42015512 |
attagattggatgttagatgagttgattaaagttttttgtaattaatgtaggctttgagaaaggctctagatgatggaaaagatcttggcatgccagatg |
42015611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 1592534 - 1592674
Alignment:
| Q |
3 |
tggcaagatggtgttcttggaacaaattgtcctattccaccaaaatggaactggacttaccaatttcaagtgaaggatcagattggaagttttttctact |
102 |
Q |
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| T |
1592534 |
tggcaggatggagttcttggtacgaattgtccaattccttcgaaatggaattggacgtatcagtttcaagtgaaggatcaaatagggagtttcttttact |
1592633 |
T |
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| Q |
103 |
ttccttcacttaattttcaaagagcagctggtggatttggt |
143 |
Q |
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| T |
1592634 |
tcccttccactaatttccaaagagcttcgggtggatttggt |
1592674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 53754489 - 53754414
Alignment:
| Q |
67 |
ttcaagtgaaggatcagattggaagttttttctactttccttcacttaattttcaaagagcagctggtggatttgg |
142 |
Q |
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| T |
53754489 |
ttcaagtgaaggatcaaattggaagcttttactactttccatctctagcatttcaaaaagcagctggtggttttgg |
53754414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6796805 - 6796850
Alignment:
| Q |
1 |
catggcaagatggtgttcttggaacaaattgtcctattccaccaaa |
46 |
Q |
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| T |
6796805 |
catggcaagatggagtactgggaacaaactgtcctattccaccaaa |
6796850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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