View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_36 (Length: 418)
Name: NF2748_high_36
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 45689755 - 45689352
Alignment:
| Q |
1 |
ttttcaatctgattgattttgcagcaagcagcatttgttctcaatgcgtcgaggcgttttagatatactctcgacttgaaaaaggaagaggagaaagaac |
100 |
Q |
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| T |
45689755 |
ttttcaatctgattgattttgcagcaagcagcatttgttctcaatgcgtcgaggcgttttagatatactctcgacttgaaaaaggaagaggagaaagaac |
45689656 |
T |
|
| Q |
101 |
aaaagaaaagcatgattagagctcatgcacaagtcatcagagtaatgtttaattaattattacatatctgatgaattattgccacaaattccttaattct |
200 |
Q |
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| T |
45689655 |
aaaagaaaagcatgattagagctcatgcacaagtcatcagagtaatgtttaattaattattacatatctgatgaattattgccacaaattccttaattct |
45689556 |
T |
|
| Q |
201 |
ttattgctaatcttattttctaatccatcatcaattcttctattaggctgctttgcttttcagaatggccggtgaacgtgaactaggtataactttttac |
300 |
Q |
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| T |
45689555 |
ctattgctaatcttattttctaatccatcatcaattcttctattaggctgctttgcttttcagaatggccggtgaacgcgaactaggtataactttttac |
45689456 |
T |
|
| Q |
301 |
aatctccctcattttcacaacctgcattcactttatttccatttttctttaacttaccacattggaaactagca----ctagtaccaggcggtatctgca |
396 |
Q |
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| T |
45689455 |
aatctccctcattttcacaacctgcattcactttatttccatttttcttaaacttaccacattggaaactagcactagctagtaccaggcggtatctgca |
45689356 |
T |
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| Q |
397 |
taag |
400 |
Q |
| |
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|||| |
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| T |
45689355 |
taag |
45689352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 1436657 - 1436785
Alignment:
| Q |
22 |
cagcaagcagcatttgttctcaatgcgtcgaggcgttttagatatactctcgacttgaaaaaggaagaggagaaagaacaaaagaaaagcatgattagag |
121 |
Q |
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|||||||||||| | || ||||||||||| |||||||||||||||||||| ||||| ||| ||||||||| ||| | |||||||| ||| | ||||||| |
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| T |
1436657 |
cagcaagcagcactggtactcaatgcgtccaggcgttttagatatactctggacttcaaaggggaagaggaaaaacagcaaaagaagagcttaattagag |
1436756 |
T |
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| Q |
122 |
ctcatgcacaagtcatcagagtaatgttt |
150 |
Q |
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| T |
1436757 |
cgcatgcacaagtcataagagtaatgttt |
1436785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 1436852 - 1436910
Alignment:
| Q |
233 |
aattcttctattaggctgctttgcttttcagaatggccggtgaacgtgaactaggtata |
291 |
Q |
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|||| |||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
1436852 |
aattgttctatcaggctgcactgctttttagattggccggtgaacgtgaactaggtata |
1436910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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