View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_46 (Length: 375)
Name: NF2748_high_46
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 3908492 - 3908838
Alignment:
| Q |
13 |
taggtgtgattcattcaacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactggactcaa |
112 |
Q |
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| T |
3908492 |
taggtgtgattcattcaacaccaagttctgctattacaacaactatagcctatctcagcctcgtttcttctgcaaaacatgcagaaggtactggactcaa |
3908591 |
T |
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| Q |
113 |
ggtggaacattgagaagtgttcctattggtggtggttgtcgtaagggaaagaaagccaaaactccatcatcctcaacaccatcaagtaattcttctctgt |
212 |
Q |
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| T |
3908592 |
ggtggaacattgagaaatgttcctattggtggtggttgtcgtaagggaaagaaatccaaaactccatcatcctcaacaccatcaagtaattcttctctgt |
3908691 |
T |
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| Q |
213 |
ctcagccaacactgccacaatcaaccgatcagttgaccatggctgctatggctaaaaactcttcttctgtttttgcttcattttcctctgctgcttcttt |
312 |
Q |
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| T |
3908692 |
ctcagccaacactgccacaatcaaccgatcagttgaccatggctgctatggctaaaaactcttcttctgtttttgcttcattttcctctgctgcttcttt |
3908791 |
T |
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| Q |
313 |
ttatcaaggaggtgttgttggttacatgtcgccttttgcggcattta |
359 |
Q |
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| T |
3908792 |
ttatcaaggaggtgttgttggttacatgtcgccttttgctgcattta |
3908838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 39741064 - 39741183
Alignment:
| Q |
28 |
caacaccaagttctgctattacaacaactatagcctttctcagcctcgtttcttctgcaaaacatgcagaaggtactggactcaaggtggaacattgaga |
127 |
Q |
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| T |
39741064 |
caacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagg |
39741163 |
T |
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| Q |
128 |
agtgttcctattggtggtgg |
147 |
Q |
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| T |
39741164 |
aatgttcctgttggaggtgg |
39741183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 34646049 - 34646087
Alignment:
| Q |
80 |
ttctgcaaaacatgcagaaggtactggactcaaggtgga |
118 |
Q |
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| T |
34646049 |
ttctgcaaaacatgtagaaggtattggactcaaggtgga |
34646087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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