View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_52 (Length: 333)
Name: NF2748_high_52
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 36304135 - 36303818
Alignment:
| Q |
18 |
tatgctaaaagatagaaacaaattcatatattaatgaacttcaaaagcaaaactagaagcacatagtaatgaaagagaatattatagatgagtac----c |
113 |
Q |
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| T |
36304135 |
tatgctaaaagatagaaacaaattcatatattaatgaacttcaaaagcaaaactaaaagcacatagtaatgaaagagaatattatagattagtacgtacc |
36304036 |
T |
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| Q |
114 |
tgaatatagaatcaacaatatggatgtgaattctgatggaaaagaaaaagatgataaatatttagattaattggagagagataatgaataaggtaaaacc |
213 |
Q |
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| T |
36304035 |
tgaatatagaaacaacaatatggatgtgaattctgatggaaaagaaaaagatgataaatatttagattaattggagagagataatgaataaggtaaaacc |
36303936 |
T |
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| Q |
214 |
tacactagatgaaacataaagtgtacaaagacagaagtaccatattaaatcaaatgtttgttgtaattgagaatgtggtaccctttttagggatcggtta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36303935 |
tacactagatgaaacataaagtgtacaaagacagaagtaccatattaaatcaaatgtttgttgtaattgagaatgtggtaccctttttagggatcggtta |
36303836 |
T |
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| Q |
314 |
tgggttttttgttgacac |
331 |
Q |
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|||||||||||||||||| |
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| T |
36303835 |
tgggttttttgttgacac |
36303818 |
T |
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