View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_53 (Length: 331)
Name: NF2748_high_53
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 40394701 - 40395005
Alignment:
| Q |
18 |
taaacaaaagaagagcacaaatgtttccttcttaacatggaccacatatgcgtatagttattcgggatcatttattctattgaaacatttgccagaatta |
117 |
Q |
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| T |
40394701 |
taaacaaaagaagagcacaaatgtttccttcttaacatggaccacatatgcgtatagttattcgggatcatttattctattgaaacatttgccagaatta |
40394800 |
T |
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| Q |
118 |
agtgatactgtgaaatcaaaccaaccactggaaaaacatgttctaatgaaaaaagacgttttcaacaaaacaccggttactttatctgaagagcc-ttaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40394801 |
agtgatactgtgaaatcaaaccaaccactggaaaaacatgttctaatgaaaaaagacgttttcaacaaaacaccggttactttatctgaagagccattaa |
40394900 |
T |
|
| Q |
217 |
gatgcacctcagagagcagaccgaaagtcactggttactttactaacctcagatatgtatggtatgagtttaaatcttgaatttctgaaggcattgtcac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40394901 |
gatgcacctcagagagcagaccgaaagtcactggttactttactaacctcagatatgtatggtatgagtttaaatcttgaatttctgaaggcattgtcac |
40395000 |
T |
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| Q |
317 |
ctttg |
321 |
Q |
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||||| |
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| T |
40395001 |
ctttg |
40395005 |
T |
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